Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0097 ATGGAGGTCGTGGTAGCCAACGCGTTAAAATCGAGTTTGCACAGAGAATTGACGGGTCTGAAATCAACCCCGCAAGCATTCGGCGAGGAAATTTGGTGTTTGAATTCGAATAACGGCGTTGCCGGTGAGGATTTCTCAGTGGATGACCTATTCGACTTCTCTCAGAGTGAATTTCAACCGGAATATGAAGAAGACGACGGGGAAAAAGACAGTCTCTCCGGTTCCTCCGCACGTGACCGGAGCGAAGAAGACACCAACTCCAATTCCTCCTCCGGCCCCGGCGATTCTGACTTCATTTTTTCTAACGAACTCGCCGTTCCGGACGATGACTTGGCTGACTTAGAATGGGTTTCTCATTTCGTTGACGATTCTCTCCCGGAGCTCTCGCTTCTGTACCCCGTCCGTTCCGAGGAAACGAAGATGAGGTCTGAACCCGAACCTAGCCCGGGCTTTGCGAAAACGCCTTGTTTTCCCTTTCAATTTCCCGTCAAGGCGAGAAGCACCAAGCGTAGAAGAGCCAGGACGTTCAGTCCCTTGCTTTCCCGGCCATCTTCGCCGCCGTCTTCGTGTTCATCGGTCTTGTCCTCGTCGTTGACTCTTATCACTGTCGGCGCGGCTCCGAACACCGCCTTTGGACATGGCGTTACGGAACCGCCCGTGAAAAAGCAGAAGAAAAGGGCGGAGGCTCGGGCCAGTAGTGGTGGTGGGTCCCAGATTCAGCGTCGGTGCACCCATTGCCAAGTGCAGAAAACCCCGCAATGGAGAACAGGTCCGCTAGGCCCCAAAACCCTTTGTAACGCTTGTGGGGTCCGGTTCAAGTCGGGTCGGCTTTTTCCAGAGTATAGACCGGCCTGTAGCCCAACTTTCTCTAGCGATGTTCACTCGAACAGCCATCGTAAAGTGTTAGAGATGAGGAAGAATAAGGAGATGAGCGAACCGGAATGTGGGTTGACTCAAACTCAAACCGTTCCGAGTTGTTGA 981 0.5311 MEVVVANALKSSLHRELTGLKSTPQAFGEEIWCLNSNNGVAGEDFSVDDLFDFSQSEFQPEYEEDDGEKDSLSGSSARDRSEEDTNSNSSSGPGDSDFIFSNELAVPDDDLADLEWVSHFVDDSLPELSLLYPVRSEETKMRSEPEPSPGFAKTPCFPFQFPVKARSTKRRRARTFSPLLSRPSSPPSSCSSVLSSSLTLITVGAAPNTAFGHGVTEPPVKKQKKRAEARASSGGGSQIQRRCTHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSSDVHSNSHRKVLEMRKNKEMSEPECGLTQTQTVPSC 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0097 326 PANTHER GATA TRANSCRIPTION FACTOR 31 310 - -
Lele35g0097 326 Gene3D - 236 312 IPR013088 GO:0006355|GO:0008270
Lele35g0097 326 ProSitePatterns GATA-type zinc finger domain. 243 268 IPR000679 GO:0006355|GO:0043565
Lele35g0097 326 CDD ZnF_GATA 242 290 IPR000679 GO:0006355|GO:0043565
Lele35g0097 326 PIRSF Txn_fac_GATA_plant 12 325 IPR016679 GO:0003677|GO:0005634|GO:0045893
Lele35g0097 326 FunFam GATA transcription factor 234 319 - -
Lele35g0097 326 SMART GATA_3 237 291 IPR000679 GO:0006355|GO:0043565
Lele35g0097 326 Pfam GATA zinc finger 243 276 IPR000679 GO:0006355|GO:0043565
Lele35g0097 326 ProSiteProfiles GATA-type zinc finger domain profile. 237 273 IPR000679 GO:0006355|GO:0043565
Lele35g0097 326 MobiDBLite consensus disorder prediction 306 326 - -
Lele35g0097 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 239 300 - -
Lele35g0097 326 MobiDBLite consensus disorder prediction 69 85 - -
Lele35g0097 326 MobiDBLite consensus disorder prediction 56 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0097 Lele-ChrLele35 572976 574081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0097 8 325 C2C2-Gata Transcription Factor Family AT5G66320 43.881 7.07e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele35g0097 GATA 6e-16 CL0167