Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0095 ATGACAAACCCTGCAGAAGATCCTCCTTCGCCCTCACGGTGCATCCCGCCGTTGCCGTCACCTGCTACCGTCGAAGACATGCCACTCGCCCGGAGAGATGACGCTAATGAAGCGAAGACCCTCCTACACTGTGACGAAGCGGAAGAGAAGCCCCCCTCTCCTTCTCTTCCACCTGCTTCCAGGGAAGTGTCAGAGGAAATCAATGTAGCTGACATTGCTGTGGAGACCAAGAGGTTGGAGGAGGAGGCAGGCGAGGCTGTCATGTCAAATGAAAATGAGGAAGAGGAGAAAGTAGTTATGGGAACGGAGACAGCAGGCACGTATGCAGCTTGCAGCTTAGGTGAGGCAGCTGAAGCAACGGAGGCATGGAAGGTGGAAGAGGAAACCAATGTAGCTAACATTGTTGAGGACATTACGAAGGCAGAAGAGGTAGCCTATGTAGCTAACATTGCTGGGAACATTACAGAGGTGGAAGAGGAAACTGATGTAGCTAACGTTGCTGGGGATAATAAGAAGGTGGAAGAGGAAACTGATGTTGCTAACATTGCTGATGATAATACGGAGGTGGAAGAGGAAACTAATGTAGCTAACATCGCTGAGGACATTACAAAGGTGAAAGAGGACGTAGATGTAGCTGACATTGTTGAAGGGGAGGTAGATGAGGCCACCATGCCATATGAGAAAGAGGAAGCAGAAAAGGTTGTAGCTAGGATGGAGCCAGCAGACACATATGTGGCTTGTTCCCTAGGTGAGACAACTGAGGCGGTAGAGATCAGGGAGCTGGACGAAGAGGCAGGTGAAGATGGCATGCCAGATGAGAATGAGGAAGCTCAGAATGTAGCAGTGGGGATGGAGCTGGAAGATGGAACTGTGGCTTTCGCCCTTGGTGAGAGAACTGAAGCAGACGGAGTTGGCATAGAGGCTGAAGATAAGGAGGAGGCAGCAGACGTGTTGAATGTGATTGGCACGGGGGAAGGTACAACTGACACAGAAGAGGATGCAGATGGAGCTGATGGAATGGATGGGGCCCTAGAGGCAGAAGAGGCGGAGGTAGCCAATGAAGCAGATTTGGTGGAAGAGGAAGTAGATGTTGCTGAAATAGCAGAATATACAGGGGGTGCTGAGTTGACTGAGGAGATGGAGATGGCTGAGGAGCAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCGTGGGAAGAACTTAAAGTCTGTAGGGAGAGTTATAGTTAGAAAAAAGGTGGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTAAGCTTGTGCTTTGTGATCGCAGGGGATGCCCAAAGGCCTATCATCCTACATGTATTAATCGTGATGATGCATTCTTTCAAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCGCTTTGTGCAAGGGGTGCATCAAAGATGCTGTCATCCTGTGTGTTAGGGGAAAGAATGGCTTTTGCGAGACATGTATGAGGACTGTAGTGCTGATTGAACAGAATGAGCTGGGGAACAAGGACACGGGACAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACACAGATCTAAAAGGGAAGCTATCTTTAACATACGATGAGCTTGCTCAAGCTAAAAACCCATGGAAGGGATCTGATATCCTTCTTACCAAGCAGGAATCGCCTGATGAGCTCTATGATGCTAATAATGATGGGGGATCACATTCGGATAGCTCTTCTGAAAATGTAGAAAGCGGTAATGTTAAAAGAAGAAAGGCCAATAAAAGATTGAAGCCCTGTCCCAAGGAGTTGAATTCGCATAGGACAATGACATTGGTTGGTGACCAAGGGCCATCTGCTGATGAGAGGTCTGAGTGGGCATCAAAGGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTAACAAATCTATTCTGTCTCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGACCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTACTAAAAGAAGATTCCCAGACTGAAGATCTACAGGGGAGTGTTGTTGATACTGAAGTTAATCATTTGGAAGGTGATGGCAATATTGATTCCCATCCGAAGACTGGAAAAGACAAGAGACGTAAAACACGAAAAAAAAGTGATGAAAGAGGGCTTCAATCCAATATTGACGATTACGCTGCTATTGATAACCATAATATTAATTTAATTTATCTAAGACGCAATTTGGTGGAAGAATTACTTGAAGATACAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCATCTGAGCCATATAAAGTTGGTAAAAGGATGACAGATACCCTGCTAGAAATCTTAAATTTAAACAAGACAGAGGTTGTATCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGTCTGCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGATATTCAAGACAAAGCAATAGCACTTCAAGCGGTCAGAGTTAAAGATTGGCTAGAAACAGAGATAGTGAGGCTAAGTCACCTCCGTGATAGAGCCAAATGTGTGGAGAAATTGCAGCTTTTAAAAACACCTGAGGAACGTCAACGAAGATTGGAGGAAATTCCAGAAATACACGCGGACCCTAACATGGATCCAAGTTATGAGTCTGAGGAGGAAGAAGAAGAAACTGATCCTAAACGACTAGAGAGTTACATGAGACCTAGAGGAACTGCATTTGATCGAAGGGGGAGAGAAATGGTTTCTCCTAGAACAGGTGGTTCTAATTCAAATGATTCATGGAGTGGAGCGAGGAACTATTCTAATATTAATCGTGAGCTAAGCAGGAATTTGTCTAATAAGGGGCTGTCTGTTAAAGTTGATGATACGTCTAATGCTTCTGACGTATTGAATGATGTTCAAATCCTCCGGGGGAGAGATAGGGAAACACAACTATCTAACAGCTGGGAGGGGCAAAAGCTATATACAAGCTTAGAAAGTAGTGGCAAAAGTATCCAGCCTGTGGTAACATCTGAGTCTCTTTCTACTACTGTGTCCAATGCCTCTGCTGTATCATCTACTGGCATAGCACTGCCTGCTGTGAAAATTAATGAAACAGAAAAGATGTGGCATTATAAGGATCCATCTGGAAAAATTCAGGGGCCATTTTCAATGGCACAGTTATGTAAATGGAATAACACTGGATATTTTCCTGCTGAGTTGAGAATTTGGAGAACCGCTGAGAAACAAGATGAGTCTATACTCTTAACTGATGCCTTAGCTGGAAACTTTTCTAAGGAACCATCGGCAGTGGATAAAACTTTTCCGAAGGCTCAGATGGTGCATAATTTAAATTATGCAGCCTCACACTCTGGGAAGCTTCATTTGCCTGCACAACCAGGTTTAGATGCTCAAGTTGGAGGAAGATCAACATTTGCTCAGAGTAGTGGGTCCTATAATTCACATAATGCTATGGGTTCTCTAGGCCAAACTACTGGAGGAAGTTGGAGATTTGAAGATAATAATTCTGTAGCAAATAGGCCTTCTCCAATGACAGTTGAGATTCCCAAGATCCCTACAAATGTTCGGGCCCCCAATGTTGGAGTTAGCATTGAATTAATGAATCTTCCTTCACCTACTCCTCAGACTACCTCTTATGGGACTAAAGGGCAGGCTTTTGAAAGTAAATGGTCGCCAACTCCTGTCCACTCTGCAGGTTCTCTTGTAGGGAGTCCTTTTCCTGGAGGTCATGGAAGCTTGCAGGCCCCTGTCGCTGCAGAGAAAGTGGTGCAAAGTGCTGAAAGTGGTTCAAGTTCACAACCTGCTAATATTCCAGCCCTAAATCCTGGCATTCCTCTTGGCTATCCTCAAGCAACGATGGTGGCAGCTATTACAGCAGATGCCTCAAGAAATACAGGTGCCGACAGTAAAACTGCAAGTGTGCAAAAATTGGCTATGAACGACCATAATTCTCATGTTGAAACTCAAGGTTGGGGATCTGGTTTAGTTCAGAAACCTGAAATGGCTGGTTCAATTCAGATAAGAGGGGGTGAACCACAGGCCTGGGGAGGTGTCCATTCAATAGTAGAATCAAATAATCCTGCTGCTATGCCTGTCCAACCACTGCTGGCTCATGGCCACTGGGCCGATGCTTCATCTATCCAGAATGCTGCCTCGTTTAACACTGGAAATCCAATGGGGAATTTCCCCATGCAAGGCATTCAAGACTTGAGACCGCCAACTTCAAGTAATCAACCTAACATTCCTGCATCTCTGCCACCCAACATGCCTTGGGGCATGACTGTTGCAGAAAATCAAAGTACTAGTTGGGGGGTAATGCCTGGAAATCCAAATCTAAATTGGGGGGGACCTCCAGCTGCCAACATGAACATGAATTGGATGCCTGGCCAGGGTCCAGCAACAGGAAACGCAAATCTAGGATGGGCTGCTCCCAATCAGGGACCATCTTCAGTAATGCCTACTGGTTGGGTTGCACCTGGTCAAGGCCATCCTAATGCTAATGGAGGTTGGGTTGTGCCTGGTCAAGGTCCGGCACCTGTGGGTGCTAATCCTGGTTGGGCTGCGCCGGCTGGGGGCCAAGTCATGTGGGGAAATGAACAAAATCATAATGGAGACAGGTTCCCAAACCATAGGGATCGTGGTCCTCATGGTGGTGAATCAGGTTATGGAGGAGATAAAACATGGAACAGGCAGTCTTCGTTTGGTGGTGCCGCCGGCCAGGGAGGAGGTTCTTCAGGGCCTCCTTTTGTGGGACAGCAGAGAGGAGTGTGCAGGTTCCACGAGAGTGGACACTGCAAGAAAGGGGCTTTTTGTGACTATCTGCACAACTGA 5070 0.456 MTNPAEDPPSPSRCIPPLPSPATVEDMPLARRDDANEAKTLLHCDEAEEKPPSPSLPPASREVSEEINVADIAVETKRLEEEAGEAVMSNENEEEEKVVMGTETAGTYAACSLGEAAEATEAWKVEEETNVANIVEDITKAEEVAYVANIAGNITEVEEETDVANVAGDNKKVEEETDVANIADDNTEVEEETNVANIAEDITKVKEDVDVADIVEGEVDEATMPYEKEEAEKVVARMEPADTYVACSLGETTEAVEIRELDEEAGEDGMPDENEEAQNVAVGMELEDGTVAFALGERTEADGVGIEAEDKEEAADVLNVIGTGEGTTDTEEDADGADGMDGALEAEEAEVANEADLVEEEVDVAEIAEYTGGAELTEEMEMAEEQGRSVSSGKRKRGKNLKSVGRVIVRKKVEEDVCFICFDGGKLVLCDRRGCPKAYHPTCINRDDAFFQAKGKWNCGWHLCSNCGKNSYYMCYTCTFALCKGCIKDAVILCVRGKNGFCETCMRTVVLIEQNELGNKDTGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWKGSDILLTKQESPDELYDANNDGGSHSDSSSENVESGNVKRRKANKRLKPCPKELNSHRTMTLVGDQGPSADERSEWASKELLEFVMHMRNGNKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDLQGSVVDTEVNHLEGDGNIDSHPKTGKDKRRKTRKKSDERGLQSNIDDYAAIDNHNINLIYLRRNLVEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKASEPYKVGKRMTDTLLEILNLNKTEVVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAIALQAVRVKDWLETEIVRLSHLRDRAKCVEKLQLLKTPEERQRRLEEIPEIHADPNMDPSYESEEEEEETDPKRLESYMRPRGTAFDRRGREMVSPRTGGSNSNDSWSGARNYSNINRELSRNLSNKGLSVKVDDTSNASDVLNDVQILRGRDRETQLSNSWEGQKLYTSLESSGKSIQPVVTSESLSTTVSNASAVSSTGIALPAVKINETEKMWHYKDPSGKIQGPFSMAQLCKWNNTGYFPAELRIWRTAEKQDESILLTDALAGNFSKEPSAVDKTFPKAQMVHNLNYAASHSGKLHLPAQPGLDAQVGGRSTFAQSSGSYNSHNAMGSLGQTTGGSWRFEDNNSVANRPSPMTVEIPKIPTNVRAPNVGVSIELMNLPSPTPQTTSYGTKGQAFESKWSPTPVHSAGSLVGSPFPGGHGSLQAPVAAEKVVQSAESGSSSQPANIPALNPGIPLGYPQATMVAAITADASRNTGADSKTASVQKLAMNDHNSHVETQGWGSGLVQKPEMAGSIQIRGGEPQAWGGVHSIVESNNPAAMPVQPLLAHGHWADASSIQNAASFNTGNPMGNFPMQGIQDLRPPTSSNQPNIPASLPPNMPWGMTVAENQSTSWGVMPGNPNLNWGGPPAANMNMNWMPGQGPATGNANLGWAAPNQGPSSVMPTGWVAPGQGHPNANGGWVVPGQGPAPVGANPGWAAPAGGQVMWGNEQNHNGDRFPNHRDRGPHGGESGYGGDKTWNRQSSFGGAAGQGGGSSGPPFVGQQRGVCRFHESGHCKKGAFCDYLHN 1689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0095 1689 SMART PHD_3 417 463 IPR001965 -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 991 1011 - -
Lele35g0095 1689 FunFam Zinc finger CCCH domain-containing protein 19 776 905 - -
Lele35g0095 1689 CDD GYF 1113 1168 IPR003169 GO:0005515
Lele35g0095 1689 ProSiteProfiles GYF domain profile. 1113 1167 IPR003169 GO:0005515
Lele35g0095 1689 MobiDBLite consensus disorder prediction 736 764 - -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 1 64 - -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 578 614 - -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 1203 1225 - -
Lele35g0095 1689 SMART rtf1 775 885 IPR004343 GO:0003677
Lele35g0095 1689 ProSiteProfiles Zinc finger PHD-type profile. 415 481 IPR019787 -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 9 23 - -
Lele35g0095 1689 FunFam Zinc finger CCCH domain-containing protein 19 1115 1172 - -
Lele35g0095 1689 Pfam SWIB/MDM2 domain 641 714 IPR003121 -
Lele35g0095 1689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 508 IPR013083 -
Lele35g0095 1689 SMART swib_2 658 719 IPR019835 -
Lele35g0095 1689 Gene3D SWIB/MDM2 domain 628 724 IPR036885 -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 1638 1652 - -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 996 1011 - -
Lele35g0095 1689 SUPERFAMILY SWIB/MDM2 domain 638 715 IPR036885 -
Lele35g0095 1689 Gene3D - 777 905 IPR036128 GO:0003677
Lele35g0095 1689 SUPERFAMILY GYF domain 1106 1166 IPR035445 -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 27 50 - -
Lele35g0095 1689 CDD SWIB-MDM2_like 639 714 - -
Lele35g0095 1689 SUPERFAMILY FYVE/PHD zinc finger 414 468 IPR011011 -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 945 959 - -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 1613 1662 - -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 945 974 - -
Lele35g0095 1689 ProSiteProfiles SWIB/MDM2 domain profile. 633 716 IPR003121 -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 1286 1305 - -
Lele35g0095 1689 ProSitePatterns Zinc finger PHD-type signature. 418 478 IPR019786 -
Lele35g0095 1689 SMART gyf_5 1114 1169 IPR003169 GO:0005515
Lele35g0095 1689 Gene3D - 1114 1173 IPR035445 -
Lele35g0095 1689 ProSiteProfiles Plus3 domain profile. 775 908 IPR004343 GO:0003677
Lele35g0095 1689 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 282 1689 - -
Lele35g0095 1689 Coils Coil 76 96 - -
Lele35g0095 1689 MobiDBLite consensus disorder prediction 1617 1632 - -
Lele35g0095 1689 CDD PHD5_NSD 417 462 - -
Lele35g0095 1689 FunFam Zinc finger CCCH domain-containing protein 19 407 507 - -
Lele35g0095 1689 Pfam GYF domain 1116 1157 IPR003169 GO:0005515
Lele35g0095 1689 FunFam Zinc finger CCCH domain-containing protein 19 626 721 - -
Lele35g0095 1689 Pfam Plus-3 domain 780 883 IPR004343 GO:0003677
Lele35g0095 1689 ProSiteProfiles Zinc finger C3H1-type profile. 1664 1689 IPR000571 GO:0046872
Lele35g0095 1689 SUPERFAMILY Plus3-like 776 905 IPR036128 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0095 Lele-ChrLele35 554177 563606 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0095 370 486 PHD Transcription Factor Family AT5G58610 28.125 5.50e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele35g0095 Plus-3 5.7e-24 No_clan