Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0062 ATGGCAAACCCTAAGGTCTACTTCGATATAACCATCGGTGGCCAGCCCGCCGGTCGCGTTGTCATGGAGCTCTTTGCGGATACCACCCCAAAGACCGCAGAGAACTTCCGTGCCCTCTGCACCGGCGAGAAGGGAGTCGGCCGCAGCGGAAAGCCCCTTCACTACAAGGGCTCCATCTTCCACCGTGTGATCCCCGACTTCATGTGCCAGGGCGGCGACTTCACCGCCGGGAACGGCACCGGCGGCGAGTCGATTTACGGCAACAAGTTCGAGGACGAGAACTTCGAGAGGAAGCACACCGGTCCCGGAGTGCTGTCTATGGCCAATGCGGGACCCGGTACCAACGGGTCGCAGTTCTTCATCTGCACGGCCCAAACGTCGTGGCTGGACGGCAAGCACGTGGTGTTCGGTCAGGTGGTGGAAGGCATGGATGTGGTGAGGGAGGTGGAGAAGGTAGGGTCAAGGTCTGGGAAGACGTCGAAGCCAGTGGTAGATATTCATATTGAAGGGGAGCGATTTGATTTGATCCCTGTGGTAGGAAACGGAAGGAAGCTCTCTATCACTAGCTGTCAACTGCTGTCCAGTTCCCGTGACTCGAGGCTTTCCATACAGGACACCTGGACAATCTTCTTTCTTCTTTGGTTTAATTTCCCTGGAGGGATTTCGATTCGATCCCTTCTTGGCGGGAAAGCTGACCACGACGACGTCCTTGTCGTTGTCTTCAACAATTCAATTGAAGTTGACAGGGACCGAGACCCAGAGATGGGAGTTCCCGAGAATTCCAAGGGTTTGATACTAGCTGTTGCATCTAGTGTATTCATAGGGGCAAGTTTCATCTTGAAGAAGAAGGGTCTTAAGCGTGCCGGTGCCCACGGTACTCGCGCAGGAGGTGGTGGCTATACTTACCTGCTAGAGCCACTATGGTGGGCTGGCATGGTGACTATGATTATTGGGGAGGTTGCGAATTTTGTGGCTTATATCTATGCTCCAGCAGTTGTGGTTACCCCCCTTGGAGCTCTGAGCATCATTGTCAGTGCTGTTTTGGCTCACTTCTTATTAAAGGAACAGCTTCAGAAGATGGGGGTATTGGGATGTATATCCTGTATTGTAGGATCAGTGGTTATTGTTATTCATGCACCTCAAGAACAAACTCCAAATTCAGTACAAGAAATATGGGATCTGGCCACTCAACCAGCATTTCTAGTTGTGAGCATAAAGGCCATTGGAATTGCAATTAAGCTTACACTTGAGGGAATTAATCAGATAACTTATCCGCAGACTTGGTTTTTTCTCACAGTGGCAACAATATGTGTCATTACCCAGTTGAATTACCTGAACAAGTTTTTTTCTTCCATATACTTGGTCGATCATTTGCTGACTTCTGAACTGATGAGAACAACTCAAGATTGGTCGGAACATGTTTTGGCGGCAATCATGCAACTGATTGATCCCATCCAATTTTGCCGTTTGGGGTGCTTGGCTTGTCAACGGTTGTGGGACGTGGGTCTGTGCATTTTGGATTCCTGTAGTTTTCTGACCATTTCTCAGCTTGCTGCTGCACAGTTATGCAGATTATGGAAGGGAACCCCTCCAGTGATGTGTGATGAACCACCGTAG 1617 0.5009 MANPKVYFDITIGGQPAGRVVMELFADTTPKTAENFRALCTGEKGVGRSGKPLHYKGSIFHRVIPDFMCQGGDFTAGNGTGGESIYGNKFEDENFERKHTGPGVLSMANAGPGTNGSQFFICTAQTSWLDGKHVVFGQVVEGMDVVREVEKVGSRSGKTSKPVVDIHIEGERFDLIPVVGNGRKLSITSCQLLSSSRDSRLSIQDTWTIFFLLWFNFPGGISIRSLLGGKADHDDVLVVVFNNSIEVDRDRDPEMGVPENSKGLILAVASSVFIGASFILKKKGLKRAGAHGTRAGGGGYTYLLEPLWWAGMVTMIIGEVANFVAYIYAPAVVVTPLGALSIIVSAVLAHFLLKEQLQKMGVLGCISCIVGSVVIVIHAPQEQTPNSVQEIWDLATQPAFLVVSIKAIGIAIKLTLEGINQITYPQTWFFLTVATICVITQLNYLNKFFSSIYLVDHLLTSELMRTTQDWSEHVLAAIMQLIDPIQFCRLGCLACQRLWDVGLCILDSCSFLTISQLAAAQLCRLWKGTPPVMCDEPP 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0062 538 SUPERFAMILY Cyclophilin-like 2 167 IPR029000 -
Lele35g0062 538 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 166 IPR002130 GO:0000413|GO:0003755
Lele35g0062 538 CDD cyclophilin_ABH_like 4 164 - -
Lele35g0062 538 Pfam Magnesium transporter NIPA 260 404 IPR008521 GO:0015095|GO:0015693|GO:0016020
Lele35g0062 538 FunFam Peptidyl-prolyl cis-trans isomerase 1 171 - -
Lele35g0062 538 Gene3D - 1 172 IPR029000 -
Lele35g0062 538 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Lele35g0062 538 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Lele35g0062 538 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Lele35g0062 538 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Lele35g0062 538 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Lele35g0062 538 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Lele35g0062 538 SUPERFAMILY Multidrug resistance efflux transporter EmrE 306 378 - -
Lele35g0062 538 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 168 IPR002130 GO:0000413|GO:0003755
Lele35g0062 538 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0062 Lele-ChrLele35 372078 378146 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0062 18 168 U-box Gene Family AT5G67530 44.737 1.12e-26 112