Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0056 ATGGTTCTTCCTCCAATACAGGATAAGAAAGTTCGACAGCTAACCAAAGCTCGACTACCAAACTCTTCTGGAAATATTGAAGAGCAATACTTTTTATAGATGGCCTCTCCTGCTTCCTTTTACGAGGTGCTGGATATTTCAATGGGGGCGAGCTGCCAAGAAATAAAGAGTGCCTACAGAAAGCTCGCAAGAGCATGTCACCCTGATGTGGTGGCCATGAATCACAAGGTCGAATCGGCCAAGGAGTTCATGAAGATCCACGCGGCCTATTCAACGTTGTCAGACCCTGATAAGCGTGCTCGATATGACAGACAGCTTTGCAGGTACAAAACATCTCTGCCCTGCCAAAATATGAACTCCATGTCAGGTCATCATCAAAGATTTGGCCAAGCTGTACATAAATGGGAGACGGATCAGTGTTGTACCGCCTCTTGGCCATTGTGGTCCAAGAGCCAAAACCAGAGAAACGAGATCCGAGCGGAGATGGGTGAGAGGGTGACTGGGAAGGTGAAGTGGTTCAGTGACCAGAAGGGTTTTGGCTTCATAACTCCTGACGATGGCGGCGAGGACCTCTTCGTCCACCAATCTGCGATCCGGACGGATGGGTTTCGCAGTCTTGGCGATGGAGAGTCTGTCGAGTTCCTGATCGAGTCCGACCCCGATGGCCGTACCAAGGCCGTCGACGTCACCGGCCCCTCTGGGGCCGATGTTCAGGGGAGCCGACGCGGTGGAGGCGGTGCTGGAGGGAACAGATCCTACGGTGGAGGCCGAGGCGGTGGTTACGGTTCTGGCGGCGGTTATGGTGGCAGTCGTGGTGGAAGAGGCGGAGGTGGAGGTGGTTATGGTGGGGGTGGCGGCGCAGGCGGTTGTTATAACTGTGGCGAGGTTGGTCACCTGGCCAGGGACTGCTACCAGGGCGGCGGCGGCGGAGGAGGAGGTAGGTACGGCGGCGGAGTTGGCGGCGGCGGCGGCGGCGGAGGGTGTTACACCTGTGGGGAGTCTGGGCATTTTGCTAGGGACTGCCCAACCGGCGCTCGCTGA 1041 0.5658 MVLPPIQDKKVRQLTKARLPNSSGNIEEQYFLXMASPASFYEVLDISMGASCQEIKSAYRKLARACHPDVVAMNHKVESAKEFMKIHAAYSTLSDPDKRARYDRQLCRYKTSLPCQNMNSMSGHHQRFGQAVHKWETDQCCTASWPLWSKSQNQRNEIRAEMGERVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRTDGFRSLGDGESVEFLIESDPDGRTKAVDVTGPSGADVQGSRRGGGGAGGNRSYGGGRGGGYGSGGGYGGSRGGRGGGGGGYGGGGGAGGCYNCGEVGHLARDCYQGGGGGGGGRYGGGVGGGGGGGGCYTCGESGHFARDCPTGAR 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0056 346 Gene3D - 324 346 - -
Lele35g0056 346 Gene3D - 286 312 - -
Lele35g0056 346 PANTHER COLD SHOCK DOMAIN PROTEIN 2 163 343 - -
Lele35g0056 346 SMART c2hcfinal6 289 305 IPR001878 GO:0003676|GO:0008270
Lele35g0056 346 SMART c2hcfinal6 327 343 IPR001878 GO:0003676|GO:0008270
Lele35g0056 346 SUPERFAMILY Chaperone J-domain 33 109 IPR036869 -
Lele35g0056 346 SMART csp_8 167 232 IPR011129 GO:0003676
Lele35g0056 346 CDD CSP_CDS 166 231 IPR002059 GO:0003676
Lele35g0056 346 Pfam Zinc knuckle 327 342 IPR001878 GO:0003676|GO:0008270
Lele35g0056 346 Pfam Zinc knuckle 289 303 IPR001878 GO:0003676|GO:0008270
Lele35g0056 346 MobiDBLite consensus disorder prediction 223 278 - -
Lele35g0056 346 Pfam DnaJ domain 40 103 IPR001623 -
Lele35g0056 346 ProSiteProfiles dnaJ domain profile. 39 106 IPR001623 -
Lele35g0056 346 ProSitePatterns Cold-shock (CSD) domain signature. 179 198 IPR019844 -
Lele35g0056 346 PRINTS DnaJ domain signature 41 59 IPR001623 -
Lele35g0056 346 PRINTS DnaJ domain signature 59 74 IPR001623 -
Lele35g0056 346 PRINTS DnaJ domain signature 78 98 IPR001623 -
Lele35g0056 346 Gene3D DnaJ domain 29 127 IPR036869 -
Lele35g0056 346 Gene3D - 159 243 IPR012340 -
Lele35g0056 346 SUPERFAMILY Nucleic acid-binding proteins 162 231 IPR012340 -
Lele35g0056 346 SMART dnaj_3 38 98 IPR001623 -
Lele35g0056 346 ProSiteProfiles Zinc finger CCHC-type profile. 328 342 IPR001878 GO:0003676|GO:0008270
Lele35g0056 346 ProSiteProfiles Cold-shock (CSD) domain profile. 165 231 IPR002059 GO:0003676
Lele35g0056 346 Pfam 'Cold-shock' DNA-binding domain 167 231 IPR002059 GO:0003676
Lele35g0056 346 PRINTS Cold shock protein signature 189 198 IPR002059 GO:0003676
Lele35g0056 346 PRINTS Cold shock protein signature 204 222 IPR002059 GO:0003676
Lele35g0056 346 PRINTS Cold shock protein signature 168 183 IPR002059 GO:0003676
Lele35g0056 346 CDD DnaJ 40 95 IPR001623 -
Lele35g0056 346 ProSiteProfiles Zinc finger CCHC-type profile. 290 303 IPR001878 GO:0003676|GO:0008270
Lele35g0056 346 ProSitePatterns Nt-dnaJ domain signature. 83 102 IPR018253 -
Lele35g0056 346 SUPERFAMILY Retrovirus zinc finger-like domains 280 344 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0056 Lele-ChrLele35 346793 349812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0056 41 103 C2H2 Transcription Factor Family AT1G74250 43.939 3.05e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele35g0056 CSD 3.3e-25 CL0021