Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0046 ATGGGAAGGTCTCCTTGCTGCGAGAAAGCTCACACTAACAAAGGAGCATGGACCAAGGAAGAAGACGATCGTCTCGTTGCTTATATTCGAGCTCACGGCGAGGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTCCTCCGCTGTGGCAAGAGCTGCCGTCTCCGCTGGATCAATTACCTCCGACCAGACCTCAAACGCGGCAATTTTACCGAAGAAGAAGATGAGCTCATCATCAAGCTCCATAGTCTCCTCGGCAACAAGTGGTCGCTGATAGCCGGGAGATTACCGGGAAGAACGGACAACGAGATAAAGAATTACTGGAATACTCATATAAGAAGGAAGCTTCTGAGCAGAGGAATTGACCCTACAACTCATAGGCCTCTCAACGATGACTCTCAGAACCAATCCCATGCCTCATCTGCTTCTGCTGCTAAACAGCAGGAACCGGAGATTCTAATTACAGATGAGAATTCCAAACGACCCGGCGTCTTAGAAGTATGCCCCGACTTGAACCTCGAGCTAACCATCAGTCTTCCCCACCACCATCATCAGAAGCAACCAGATCTGCCATCGCTCAAGAGCATTAATAGTGGAAGCAGTACGGCTGGCGATGGTTATGACTTCTTGGGATTGAAAAGCGGTGTTTTGGATTGCAGGAGCAGCGTAACCCAAATAGATTGGAGAGCACTCACAGAATGA 702 0.5057 MGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRPLNDDSQNQSHASSASAAKQQEPEILITDENSKRPGVLEVCPDLNLELTISLPHHHHQKQPDLPSLKSINSGSSTAGDGYDFLGLKSGVLDCRSSVTQIDWRALTE 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0046 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lele35g0046 233 SMART sant 66 114 IPR001005 -
Lele35g0046 233 SMART sant 13 63 IPR001005 -
Lele35g0046 233 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lele35g0046 233 Gene3D - 14 66 - -
Lele35g0046 233 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Lele35g0046 233 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lele35g0046 233 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lele35g0046 233 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 149 - -
Lele35g0046 233 Gene3D - 69 152 - -
Lele35g0046 233 FunFam MYB transcription factor MYB48 69 167 - -
Lele35g0046 233 MobiDBLite consensus disorder prediction 127 148 - -
Lele35g0046 233 MobiDBLite consensus disorder prediction 121 158 - -
Lele35g0046 233 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Lele35g0046 233 CDD SANT 16 61 IPR001005 -
Lele35g0046 233 FunFam MYB-related transcription factor 13 66 - -
Lele35g0046 233 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lele35g0046 233 CDD SANT 69 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0046 Lele-ChrLele35 307952 308866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0046 1 212 MYB Transcription Factor Family AT4G38620 60.000 7.38e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele35g0046 Myb_DNA-binding 4.2e-14 CL0123