Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele35g0034 | ATGGAGTTTGATGAATATGAGTACTTAGAGAAGACGGTTGAAAATCCTGAACTTCAGAGGAAGGAGAAAACTAATGGTAGTGACCTAACTGTAAAAGCTGAAGAGAGAGATCGTAGTCGGAGTTCAAAGCAAGAAATTAAATCTAGTGAGAAGCGTGATGATGTTGATCGTCATTCGAAGAAATTAAAATCTGGAGATGATTCTCATGGTTATGACAGTCACAAAGAAAGAGGGTCATCTCAACATCGTTCACCTTCCAGAGATGGAGACAAGGAGAAAGATCGGCATAGAAGCATCCATGACAATACGGGTAGGGTGAGAGATCAAGATAGAGACAAGAGAGACAGACTCCGAGAACATGACCGTGACCACCGAGAAAGAGACAAAAGAGACCAGGGGAGTGAGAGTAAACGAGAAAGGGAGAGGGACCACTCACGGCGAAGCAGAAGTTTATCTGAAAGGCATCGGAGTGATTTGGATGAAAGAGATAGAGAGAGGAGTCATGATAGAGACTATAGAGACAGAGAAAGAAGCCGGGACAAGGATTACAAAGAGAGAGAAAGGGAGAGAGAATCAAGGGAGTGGGATAGAGATAACAGACGACATAAAGAAAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGACCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATGTATATGAGTTCTTCTCTAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAATACCCGTCGATCTAAGGGTTTTGGGTATATAGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGACAACCACTTCTTGGCCAACCAGTGATGGTGAAACCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACTACTTCTGTATCTAGTGGATCCACTGGACTTATGGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGCAATTTGCATTTCAGTATTACCGAAGCTGATCTTCGTGGGGTTTTTGAAGCATTCGGTCAGGTTGAGCTAGTCCAGCTGCCTCATGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCATGCCTTGAAGATGCAAGAAATGCCCAGAGCTTAAATGGACAACTTGAAATTGGTGGCAGGACAATAAAGGTATCTACAGTTATTGATCAACCCGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTCGATGATGATGATGATGGCGGGGGCGGCTTGTCCCTCAACGCATGTTCTCGGGCATTACTCATGCAGAAATTGGATCGTAGTGGCACTGGATCAGGTATTACTGGTTCCCTAGGTAATTCTATTGCCAACAAAACAAGCCTTAACCTACCACCTACAGCACGTGTGGGAGCTCCATCTGTGGGTTCTCTAGCGGTTTCTCCAATTGCCCCAGTTCCTTCAGCAGCTGGGTTGCCAGGTGGAAGTCTACAAATTCCCACTGCTACTGCTACGTTTCCTACTATTGATACAATTGGGGCTTCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAAATTTAAAACATGTATATGTCGACAAGAACACTGCTGGCTTTGTCTACTTACGATTTGACAATACTCAAGCTGCTATAAATGCACAGCGATCTCTGCATGGGAGGTGGTTTGCAGGGAAGATGATCACTGCTAGCTTCATGGTTCCTCAGGTATATGAGGATAAATTCCAAGACAGCAGATAG | 1839 | 0.4421 | MEFDEYEYLEKTVENPELQRKEKTNGSDLTVKAEERDRSRSSKQEIKSSEKRDDVDRHSKKLKSGDDSHGYDSHKERGSSQHRSPSRDGDKEKDRHRSIHDNTGRVRDQDRDKRDRLREHDRDHRERDKRDQGSESKRERERDHSRRSRSLSERHRSDLDERDRERSHDRDYRDRERSRDKDYKERERERESREWDRDNRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGFGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVSSGSTGLMGPYSGGARRLYVGNLHFSITEADLRGVFEAFGQVELVQLPHDETGHCKGFGFVQFACLEDARNAQSLNGQLEIGGRTIKVSTVIDQPGMQEVGGNTGDFDDDDDGGGGLSLNACSRALLMQKLDRSGTGSGITGSLGNSIANKTSLNLPPTARVGAPSVGSLAVSPIAPVPSAAGLPGGSLQIPTATATFPTIDTIGASSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGNLKHVYVDKNTAGFVYLRFDNTQAAINAQRSLHGRWFAGKMITASFMVPQVYEDKFQDSR | 612 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele35g0034 | 612 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 221 | 298 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | CDD | RRM1_RBM39_like | 222 | 294 | - | - | |
Lele35g0034 | 612 | MobiDBLite | consensus disorder prediction | 1 | 220 | - | - | |
Lele35g0034 | 612 | SMART | rrm1_1 | 519 | 597 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | SMART | rrm1_1 | 222 | 294 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | SMART | rrm1_1 | 326 | 398 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | FunFam | CC1-like, splicing factor | 320 | 430 | - | - | |
Lele35g0034 | 612 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 518 | 601 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | TIGRFAM | SF-CC1: splicing factor, CC1-like family | 113 | 610 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
Lele35g0034 | 612 | FunFam | RNA-binding protein 39 isoform X1 | 214 | 306 | - | - | |
Lele35g0034 | 612 | Gene3D | - | 514 | 612 | IPR012677 | - | |
Lele35g0034 | 612 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 418 | 536 | IPR029123 | - | |
Lele35g0034 | 612 | Gene3D | - | 150 | 308 | IPR012677 | - | |
Lele35g0034 | 612 | CDD | RRM3_RBM39_like | 517 | 599 | - | - | |
Lele35g0034 | 612 | SUPERFAMILY | RNA-binding domain, RBD | 325 | 601 | IPR035979 | GO:0003676 | |
Lele35g0034 | 612 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 327 | 396 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 542 | 594 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 231 | 290 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 325 | 402 | IPR000504 | GO:0003723 | |
Lele35g0034 | 612 | Gene3D | - | 320 | 429 | IPR012677 | - | |
Lele35g0034 | 612 | FunFam | Splicing factor, CC1-like protein | 513 | 612 | - | - | |
Lele35g0034 | 612 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 610 | - | - | |
Lele35g0034 | 612 | SUPERFAMILY | RNA-binding domain, RBD | 214 | 323 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele35g0034 | Lele-ChrLele35 | 246686 | 254091 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele35g0034 | 222 | 388 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 29.586 | 7.90e-14 | 72.8 |