Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0034 ATGGAGTTTGATGAATATGAGTACTTAGAGAAGACGGTTGAAAATCCTGAACTTCAGAGGAAGGAGAAAACTAATGGTAGTGACCTAACTGTAAAAGCTGAAGAGAGAGATCGTAGTCGGAGTTCAAAGCAAGAAATTAAATCTAGTGAGAAGCGTGATGATGTTGATCGTCATTCGAAGAAATTAAAATCTGGAGATGATTCTCATGGTTATGACAGTCACAAAGAAAGAGGGTCATCTCAACATCGTTCACCTTCCAGAGATGGAGACAAGGAGAAAGATCGGCATAGAAGCATCCATGACAATACGGGTAGGGTGAGAGATCAAGATAGAGACAAGAGAGACAGACTCCGAGAACATGACCGTGACCACCGAGAAAGAGACAAAAGAGACCAGGGGAGTGAGAGTAAACGAGAAAGGGAGAGGGACCACTCACGGCGAAGCAGAAGTTTATCTGAAAGGCATCGGAGTGATTTGGATGAAAGAGATAGAGAGAGGAGTCATGATAGAGACTATAGAGACAGAGAAAGAAGCCGGGACAAGGATTACAAAGAGAGAGAAAGGGAGAGAGAATCAAGGGAGTGGGATAGAGATAACAGACGACATAAAGAAAAAAAGGAAGAAGCAGCAGAACCTGAGGCTGACCCTGAACGGGATCAGAGGACTGTGTTTGCTTATCAGATTTCTCTGAAGGCAGATGAAAGAGATGTATATGAGTTCTTCTCTAGGGCTGGCAAGGTGCGAGATGTTCGCCTGATAATGGACCGCAATACCCGTCGATCTAAGGGTTTTGGGTATATAGAGTTCTATGATGTCATGTCTGTCCCCATGGCAATAGCACTTTCTGGACAACCACTTCTTGGCCAACCAGTGATGGTGAAACCATCAGAAGCAGAAAAGAATTTGGTTCAGTCTACTACTTCTGTATCTAGTGGATCCACTGGACTTATGGGCCCTTATTCTGGGGGAGCAAGAAGGCTCTATGTTGGCAATTTGCATTTCAGTATTACCGAAGCTGATCTTCGTGGGGTTTTTGAAGCATTCGGTCAGGTTGAGCTAGTCCAGCTGCCTCATGATGAAACTGGGCACTGCAAAGGTTTTGGCTTTGTGCAGTTTGCATGCCTTGAAGATGCAAGAAATGCCCAGAGCTTAAATGGACAACTTGAAATTGGTGGCAGGACAATAAAGGTATCTACAGTTATTGATCAACCCGGAATGCAAGAAGTTGGAGGAAATACTGGTGATTTCGATGATGATGATGATGGCGGGGGCGGCTTGTCCCTCAACGCATGTTCTCGGGCATTACTCATGCAGAAATTGGATCGTAGTGGCACTGGATCAGGTATTACTGGTTCCCTAGGTAATTCTATTGCCAACAAAACAAGCCTTAACCTACCACCTACAGCACGTGTGGGAGCTCCATCTGTGGGTTCTCTAGCGGTTTCTCCAATTGCCCCAGTTCCTTCAGCAGCTGGGTTGCCAGGTGGAAGTCTACAAATTCCCACTGCTACTGCTACGTTTCCTACTATTGATACAATTGGGGCTTCAAGTGAATGCTTATTGTTAAAGAATATGTTTGATCCCAAAGATGAGAAGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAGTTTGGAAATTTAAAACATGTATATGTCGACAAGAACACTGCTGGCTTTGTCTACTTACGATTTGACAATACTCAAGCTGCTATAAATGCACAGCGATCTCTGCATGGGAGGTGGTTTGCAGGGAAGATGATCACTGCTAGCTTCATGGTTCCTCAGGTATATGAGGATAAATTCCAAGACAGCAGATAG 1839 0.4421 MEFDEYEYLEKTVENPELQRKEKTNGSDLTVKAEERDRSRSSKQEIKSSEKRDDVDRHSKKLKSGDDSHGYDSHKERGSSQHRSPSRDGDKEKDRHRSIHDNTGRVRDQDRDKRDRLREHDRDHRERDKRDQGSESKRERERDHSRRSRSLSERHRSDLDERDRERSHDRDYRDRERSRDKDYKERERERESREWDRDNRRHKEKKEEAAEPEADPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNTRRSKGFGYIEFYDVMSVPMAIALSGQPLLGQPVMVKPSEAEKNLVQSTTSVSSGSTGLMGPYSGGARRLYVGNLHFSITEADLRGVFEAFGQVELVQLPHDETGHCKGFGFVQFACLEDARNAQSLNGQLEIGGRTIKVSTVIDQPGMQEVGGNTGDFDDDDDGGGGLSLNACSRALLMQKLDRSGTGSGITGSLGNSIANKTSLNLPPTARVGAPSVGSLAVSPIAPVPSAAGLPGGSLQIPTATATFPTIDTIGASSECLLLKNMFDPKDEKEPDFDLDIKEDVEAECSKFGNLKHVYVDKNTAGFVYLRFDNTQAAINAQRSLHGRWFAGKMITASFMVPQVYEDKFQDSR 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0034 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 298 IPR000504 GO:0003723
Lele35g0034 612 CDD RRM1_RBM39_like 222 294 - -
Lele35g0034 612 MobiDBLite consensus disorder prediction 1 220 - -
Lele35g0034 612 SMART rrm1_1 519 597 IPR000504 GO:0003723
Lele35g0034 612 SMART rrm1_1 222 294 IPR000504 GO:0003723
Lele35g0034 612 SMART rrm1_1 326 398 IPR000504 GO:0003723
Lele35g0034 612 FunFam CC1-like, splicing factor 320 430 - -
Lele35g0034 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 518 601 IPR000504 GO:0003723
Lele35g0034 612 TIGRFAM SF-CC1: splicing factor, CC1-like family 113 610 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele35g0034 612 FunFam RNA-binding protein 39 isoform X1 214 306 - -
Lele35g0034 612 Gene3D - 514 612 IPR012677 -
Lele35g0034 612 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 418 536 IPR029123 -
Lele35g0034 612 Gene3D - 150 308 IPR012677 -
Lele35g0034 612 CDD RRM3_RBM39_like 517 599 - -
Lele35g0034 612 SUPERFAMILY RNA-binding domain, RBD 325 601 IPR035979 GO:0003676
Lele35g0034 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 327 396 IPR000504 GO:0003723
Lele35g0034 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 542 594 IPR000504 GO:0003723
Lele35g0034 612 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 231 290 IPR000504 GO:0003723
Lele35g0034 612 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 325 402 IPR000504 GO:0003723
Lele35g0034 612 Gene3D - 320 429 IPR012677 -
Lele35g0034 612 FunFam Splicing factor, CC1-like protein 513 612 - -
Lele35g0034 612 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 610 - -
Lele35g0034 612 SUPERFAMILY RNA-binding domain, RBD 214 323 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0034 Lele-ChrLele35 246686 254091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0034 222 388 Eukaryotic Initiation Factors Gene Family AT4G34110 29.586 7.90e-14 72.8