Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele35g0021 ATGGATTCCCTCAAAAAATCATTCAAGTCCTATTATTCTTACAAACATCGCACGGACGCCGACTCCGGCCACGAGCAGCTTCCCATTCTCCTCGATCAAGAACCTCACGACGATCATCATCGTCCTCCTCACCTCACTACTCCATCATCCATGTCCTCCACTACTCCCAGTCCACATCGCCCCGAAGTTGTCCTTAAAATCGACGAAGGCGACTCCAGAGGTCCCGCAGTGCAGCAGGGTGGCAAGATTTGGAGAGAAACTAGCTATGACTTCTGGAACAATGCAGACGTGAGCAAGAGTGCCAGTGATGGGGGTGCTGGCGCTAGTACTAGTGGTAATGACGAGGATAGCTTCGATTTCCGGCATCGTGGGCAGGGTTCCGAGGATCCACCCTCCATGCTCATTGGTAAGTTCTTGCACAAACAGAAAGCTTCTGGTGACATGTCGCTCGATATGGATTTAGAAATGGAGGAGTTCCAGCATGACTACAAATTGCCTCCGGTGGAAGAGTCTCCGCAGCTCAGTCGCATTTCCAAGGACCTCAAAGTCTCGTTTGAGGAACCCACTGTTGAGGTGGCAACTGATACCGTTAGACGAAGGTACAAGGACTCGCCGGGTCACCCCGAAGTTCATAAATCGCCGCAACGCGATCAACGTGGATCGCCGGCTGGTGCTCAGAGCGGTAATGCTGCTGCCGGAGATGGCGAGGTGGTAAGATGTACCTCCAACGCCACTTATGAAAGGAATCTTTCGTGGCAGAGGAAATCTGCTTTGCTGAAGGCCAGAAATAGGTCAAGATTGTTGGATCCGCCGGAGGAGCCGGACCGAAGGTCTGGTCGGGTAGCAAAATCAGGGCAAATGTTATCGGCGATGTTAGGGAAGAAAGGGGAGGACGAGGAAGACGACCCGTTTTTGGAGGAGGACGTACCCGATGAGTTGAAAAATACCCATTTTAGCATATGGGTTCTGCTTGAGTGGTTGAGTTTGATTTTGTCTGTTGCTGCGCTAGCATGCACGCTGAGTATCCCAGTTTTGAGGAATAAGATTCTCTGGAAGCTCCAGTTATGGAAATGGGAGGTGATGATCCTGGTTCTGATTTGTGGTCGGTTGGTTTCTGATTGGGTAATTCGAATTTTGGTGTTCTTTATCGAAAGAAATTTCCTTTTGAGGAAGAGAGTCCTCTATTTCGTATATGGTGTGAGGAAGGCAGTTCAAAATTGTTTATGGTTGGGATTTGTTTTGATTGCTTGGCATCTATTATTCGATAAGAAGGTTGAGAGGGCGACTAGAGGCAACAACGCCCTTCAATATGTCACCAAGGTCTTGGTCTGCTTCTTGGTGGGTACTTTGGTATGGTTGGCAAAAACTCTCGTGGTTAAGGTTATGGCTTCTTCCTTCTATACAAGCACATACTTTGATAGGATTCAGGAGTCACTGTTTAATCAATTTGTGATTGAAACACTGTCGGGGCCACCTCTGATCGAAATTCAGAAGTCAGAGGAAGAGGAACAAAAACTTGCTGATGAGGTTCAGAAACTGCAGAATGCTGGGGTTAACATTCCCCCTGAGCTCAGGGCAACTGCCTTCTCCTCAACCAAGAGTCCAAGGGCATCTGCCTTCTCTAGAACTAAGAGTCCAAGGGCGACGAAAAGTGGAATGCTCCAGAAAAGCCCCCGTCTTATAAGTGGAAAGTTTTCTCGTCCGCTCTCCCATAAGTCAGATGATGGAATTACTATTGATCACCTACATAAGCTGAATCCGAAAAATGTCTCTGCGTGGAATATGAAAAGGTTAATGAATATGGTCCGGCACGGCACTCTTTCTACACTGGATGAGCAGATACTTGATTCAGCTCAAGATGATGAAAATGGCACACAGATTAGAAGTGAAAATGAGGCAAAAGCTGCGGCAAAGAAAATATTTCAGAATGTTGCCAGGCGGGGTAGCAGGTTCATTTACCTGGAGGATTTGATGCGTTTTATGCGGGAAGATGAAGCTGAGAAGGCCATGGATCTCTTTGAAGGAGCATCTGATTCCGGGAAGATCAGCAAATCTGCCTTGAAGAACTGGGTGGTTAATGCCTTCAGAGAGAGGAGAGCACTTGCTTTGACCTTGACTGATACCAAAACCGCAGTGAACAAACTTCATCGAATACTCAATTTTATAGTTGGCATCATTATACTGGTTATCTGGCTATTAATAGTGGAAATTGCCACCACCAAATTTCTTCTCTTTGTGAGCTCACAGCTTGTCTTGGTTGCGTTTATATTTGGAAATACCTGCAAGACGGTATTTGAAGCAATTGTTTTCTTATTTGTCATGCACCCATTTGACGTGGGAGATAGGTGTGAAATCGATGGGGTCCAGATGGTTGTGGAAGAAATGAATATACTGACAACCATATTTTTAAGATATGACAATCAAAAAATAATCATCCCCAACAGCGTCCTTGCAACTAAGGCCATCAATAATTACTACCGGAGTCCTGACATGGGAGATGCTGTTGATTTCTTCATACACGTGTCTACCCCAGCTGAAAAGATTGCACTCATGAAACAAAGAATACATAGCTTCATCGATAACAAGAAGGAGCACTGGTATCCTTCAGCTTTTATAGTCTTCAGGGATCTAGAACAATTAAACATGATAAGGATATCGATTTGGCCAACTCATAGGATGAACCACCAAGACATGGGAGAAAGGTTTGTCAGAAGATCCCTTCTTATTGAAGAGCTGCTCAGGATATTCCGGGAGCTTGACATCCAGTATCGTCTTCTTCCCCTCGATATTAACATCAGAAGCATGCCTACCACTTCCGAACGGCTTCCACCTAGTTGGGCCACAATCACGAGTTAA 2856 0.4594 MDSLKKSFKSYYSYKHRTDADSGHEQLPILLDQEPHDDHHRPPHLTTPSSMSSTTPSPHRPEVVLKIDEGDSRGPAVQQGGKIWRETSYDFWNNADVSKSASDGGAGASTSGNDEDSFDFRHRGQGSEDPPSMLIGKFLHKQKASGDMSLDMDLEMEEFQHDYKLPPVEESPQLSRISKDLKVSFEEPTVEVATDTVRRRYKDSPGHPEVHKSPQRDQRGSPAGAQSGNAAAGDGEVVRCTSNATYERNLSWQRKSALLKARNRSRLLDPPEEPDRRSGRVAKSGQMLSAMLGKKGEDEEDDPFLEEDVPDELKNTHFSIWVLLEWLSLILSVAALACTLSIPVLRNKILWKLQLWKWEVMILVLICGRLVSDWVIRILVFFIERNFLLRKRVLYFVYGVRKAVQNCLWLGFVLIAWHLLFDKKVERATRGNNALQYVTKVLVCFLVGTLVWLAKTLVVKVMASSFYTSTYFDRIQESLFNQFVIETLSGPPLIEIQKSEEEEQKLADEVQKLQNAGVNIPPELRATAFSSTKSPRASAFSRTKSPRATKSGMLQKSPRLISGKFSRPLSHKSDDGITIDHLHKLNPKNVSAWNMKRLMNMVRHGTLSTLDEQILDSAQDDENGTQIRSENEAKAAAKKIFQNVARRGSRFIYLEDLMRFMREDEAEKAMDLFEGASDSGKISKSALKNWVVNAFRERRALALTLTDTKTAVNKLHRILNFIVGIIILVIWLLIVEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIVFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTIFLRYDNQKIIIPNSVLATKAINNYYRSPDMGDAVDFFIHVSTPAEKIALMKQRIHSFIDNKKEHWYPSAFIVFRDLEQLNMIRISIWPTHRMNHQDMGERFVRRSLLIEELLRIFRELDIQYRLLPLDINIRSMPTTSERLPPSWATITS 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele35g0021 951 MobiDBLite consensus disorder prediction 529 554 - -
Lele35g0021 951 SUPERFAMILY Sm-like ribonucleoproteins 766 825 IPR010920 -
Lele35g0021 951 MobiDBLite consensus disorder prediction 99 114 - -
Lele35g0021 951 MobiDBLite consensus disorder prediction 194 216 - -
Lele35g0021 951 MobiDBLite consensus disorder prediction 263 286 - -
Lele35g0021 951 MobiDBLite consensus disorder prediction 194 236 - -
Lele35g0021 951 PIRSF Memb_At2g17000 40 951 IPR016688 -
Lele35g0021 951 Gene3D - 776 825 IPR023408 -
Lele35g0021 951 Coils Coil 496 516 - -
Lele35g0021 951 MobiDBLite consensus disorder prediction 45 59 - -
Lele35g0021 951 MobiDBLite consensus disorder prediction 33 61 - -
Lele35g0021 951 MobiDBLite consensus disorder prediction 265 280 - -
Lele35g0021 951 FunFam Predicted mechanosensitive ion channel 776 825 - -
Lele35g0021 951 Pfam Mechanosensitive ion channel 717 921 IPR006685 GO:0016020|GO:0055085
Lele35g0021 951 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 36 946 IPR016688 -
Lele35g0021 951 MobiDBLite consensus disorder prediction 99 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele35g0021 Lele-ChrLele35 167585 171630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele35g0021 60 951 Mechanosensitive Ion Channel Family AT1G78610 57.516 0.0 960