Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1351 ATGGGTTGCTGCCCCTCCTCATTTCTGACCGAAACTCACCCAGAAAAGCAGCAAAATCAACCACCCCCTCACCATGTTCACACTCACAACCACATCCATACCCAACCACACCCGCCACCTTGTCTGACCCCCGACCCTTCCGCCGCCGGTGGGGTTCCCTCTTTCTCCGAGTTCTCTCTCACCGACCTCAAAGCAGCCACCAATAATTTTAGCTCCGACTTTATTGTGTCTGAGAGCGGAGAGAAGGCCCCCAACCTTGTGTATAAAGGTCGCCTCCCCAACCGCCGTTGGATTGCCGTCAAGAAGTTCACCAAGGCTGCATGGCCCGATCCCAAGCAATTTGTGGATGAGGCGTCAGGTGTTGGAAAATTGCGACATCGCAGGCTCGCTAATTTGATTGGCTACTGCTGTGATGGAGATGAGAGGCTCCTTGTTGCAGAATACATGCCCAATGACACTCTCGCTAAGCATCTTTTCCACTGGGAAAATCAGACCATTGAGTGGGCCATGCGCTTAAGAGTAGCTCTTTCCATTGCAGAAACTTTAAATTACTGTAGTTCTGAGGGTCGCCCATTATACCATGATTTGAATGCTTATAGGGTTCTTTTTGATGAGGAAGGTGATCCACGTCTGTCATGTTTTGGTTTGATGAAGAACAGTAGGGATGGAAAAAGTTATAGCACGAATCTTGCTTACACACCTCCTGAGTACTTAAGAAATGGAAGGGTCACTCCTGAAAGTGTCATTTACAGCTTTGGTACTGTTCTCCTAGACCTGCTAAGTGGAAAACACATCCCTCCAAGTCATGCACTTGACATGATACAGGGGAAAGCCAACATGCTTCTTATGGATTCACATTTAGAGGGAAAGTTCTCTAAAGAAGAGGCGGCAGTAGTTGTCAATCTGGCCTCTAAATGTTTGCAATACGAACCCAGGGAGCGGCCTGATACAAAGGAATTAGTCACAACACTTGCTCCATTGCAAACAAAACCTGATGTGCCTTCTTACATTATGCTTGGAATTCCAAAGCATGAGGAAGCTCCATCAACCCCACAACGCCCTCTTTCAGCCATGGGTGAGGCTTGTTCGAGGATGGACCTCACTGCAATACATCAGATCTTGGTTGCAACGCACTACAGAGATGACGAAGGGACTAATGAGTTGTCTTTCCAAGAGTGGACCCAACAGATGAGGGATATGTTGGAAGCAAGGAAGCGTGGAGACTACGCATTCCGTGACAAAGATTTCAAGACAGCAATTGAGAATTATTCCCAGTTTATCGATGTGGGAACGATGGTGTCGCCAACAGTTTTTGCTCGGCGCAGTCTATGCTATCTGTTATGCGATCAACCAGATCCTGCGCTGAGAGACGCAATGCAAGCACAATGTGTTTATCCAGACTGGCCTACAGCATTCTACATGCAATCAGTTGCTCTGGCGAAGCTTGACATGCAGAAGGACGCTGCTGATATGTTGAATGAGGCTACTGCTTTGGAAGAGAAGAGGCAAAGAGGAGGCAGAGGCGCATAA 1530 0.4791 MGCCPSSFLTETHPEKQQNQPPPHHVHTHNHIHTQPHPPPCLTPDPSAAGGVPSFSEFSLTDLKAATNNFSSDFIVSESGEKAPNLVYKGRLPNRRWIAVKKFTKAAWPDPKQFVDEASGVGKLRHRRLANLIGYCCDGDERLLVAEYMPNDTLAKHLFHWENQTIEWAMRLRVALSIAETLNYCSSEGRPLYHDLNAYRVLFDEEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRNGRVTPESVIYSFGTVLLDLLSGKHIPPSHALDMIQGKANMLLMDSHLEGKFSKEEAAVVVNLASKCLQYEPRERPDTKELVTTLAPLQTKPDVPSYIMLGIPKHEEAPSTPQRPLSAMGEACSRMDLTAIHQILVATHYRDDEGTNELSFQEWTQQMRDMLEARKRGDYAFRDKDFKTAIENYSQFIDVGTMVSPTVFARRSLCYLLCDQPDPALRDAMQAQCVYPDWPTAFYMQSVALAKLDMQKDAADMLNEATALEEKRQRGGRGA 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1351 509 Gene3D Transferase(Phosphotransferase) domain 1 150 340 - -
Lele34g1351 509 ProSiteProfiles Protein kinase domain profile. 73 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele34g1351 509 Coils Coil 481 501 - -
Lele34g1351 509 FunFam probable serine/threonine-protein kinase At4g35230 398 507 - -
Lele34g1351 509 Gene3D Tetratricopeptide repeat domain 398 506 IPR011990 GO:0005515
Lele34g1351 509 MobiDBLite consensus disorder prediction 1 48 - -
Lele34g1351 509 SUPERFAMILY TPR-like 401 502 IPR011990 GO:0005515
Lele34g1351 509 Gene3D Phosphorylase Kinase; domain 1 48 148 - -
Lele34g1351 509 Pfam Protein tyrosine and serine/threonine kinase 88 324 IPR001245 GO:0004672|GO:0006468
Lele34g1351 509 MobiDBLite consensus disorder prediction 10 25 - -
Lele34g1351 509 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 23 504 IPR045845 GO:0004672|GO:0009742
Lele34g1351 509 FunFam probable serine/threonine-protein kinase At4g35230 45 148 - -
Lele34g1351 509 SUPERFAMILY Protein kinase-like (PK-like) 54 334 IPR011009 -
Lele34g1351 509 FunFam probable serine/threonine-protein kinase At5g41260 150 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1351 Lele-ChrLele34 21211460 21217068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1351 58 336 Glycoside Hydrolase AT3G07070 35.948 9.30e-45 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Lele34g1351 PK_Tyr_Ser-Thr 6e-26 CL0016