Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1306 ATGAGTAGACAAAAAATACATAGTCTTCAGAAGATTGTATTCACGTTATTAGTTGGTGCGAGTGAATCAGTACCAAGAAAACCTTTTTATGGGCAAAGGAAATTCTTGCCTAGTGTGAAAATCATACTCTAAGCCATCCTTAACATGGGAAGGTCTCCTTGCTGCGAGAAAGCTCACACTAACAAAGGAGCATGGACCAAGGAAGAAGACGATCGTCTTGTTGCTTATATTCGAGCTCACGGCGAGGGCTGCTGGCGCTCTCTCCCCAAAGCCGCCGGCCTCCTCCGTTGTGGCAAGAGCTGCCGTCTCCGCTGGATCAACTACCTCCGTCCCGACCTCAAACGCGGCAATTTTACTGAAGAAGAAGATGAGCTCATCATCAAGCTCCACAGTCTCCTCGGCAATAAGTGGTCGCTGATAGCCGGGAGATTACCGGGAAGAACGGACAACGAGATAAAGAATTACTGGAATACTCATATAAGAAGGAAGCTTCTGAGCAGAGGAATTGACCCTACAACTCACAGGCCTCTCAACGATGCTTCTCAGAACCAATCTCATGCCTCATCTGCTTCTGCTGCTAAACAGCACGACTCGGAGATTCTGATTACGGACACAGATGCGAATTCCAAACGACCCGGCGTCTTTGAAGTGTGCCCCGACTTGAACCTTGAGCTAACCATCAGTCTTCCCCATCATCATCAGCATCAGCAACCAGATCAGATATCGCTCAAGAGCATTAATAGTGAGAGCAGTACGGCTGGCGATGGTTTTGATTTCTTGGAATCGAAAAGCAGTGTTTTGGATTGCAGGAGCAGCGTAACCCAAATAGATTGGAGAGCACTCAGAGAATGA 852 0.4765 MSRQKIHSLQKIVFTLLVGASESVPRKPFYGQRKFLPSVKIILXAILNMGRSPCCEKAHTNKGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPTTHRPLNDASQNQSHASSASAAKQHDSEILITDTDANSKRPGVFEVCPDLNLELTISLPHHHQHQQPDQISLKSINSESSTAGDGFDFLESKSSVLDCRSSVTQIDWRALRE 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1306 283 SUPERFAMILY Homeodomain-like 61 156 IPR009057 -
Lele34g1306 283 ProSiteProfiles Myb-like domain profile. 110 160 IPR001005 -
Lele34g1306 283 Pfam Myb-like DNA-binding domain 115 159 IPR001005 -
Lele34g1306 283 Pfam Myb-like DNA-binding domain 62 109 IPR001005 -
Lele34g1306 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 109 IPR017930 -
Lele34g1306 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 164 IPR017930 -
Lele34g1306 283 MobiDBLite consensus disorder prediction 167 200 - -
Lele34g1306 283 SMART sant 114 162 IPR001005 -
Lele34g1306 283 SMART sant 61 111 IPR001005 -
Lele34g1306 283 ProSiteProfiles Myb-like domain profile. 57 109 IPR001005 -
Lele34g1306 283 MobiDBLite consensus disorder prediction 175 198 - -
Lele34g1306 283 FunFam MYB transcription factor MYB48 117 215 - -
Lele34g1306 283 FunFam MYB-related transcription factor 61 114 - -
Lele34g1306 283 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 49 233 - -
Lele34g1306 283 Gene3D - 116 199 - -
Lele34g1306 283 Gene3D - 62 114 - -
Lele34g1306 283 CDD SANT 117 160 IPR001005 -
Lele34g1306 283 CDD SANT 64 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1306 Lele-ChrLele34 20900210 20904015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1306 49 260 MYB Transcription Factor Family AT4G38620 59.316 5.83e-97 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele34g1306 Myb_DNA-binding 5.7e-14 CL0123