Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1295 ATGGGCTCTGCGATTGCTACACAAATTGAAAGACGAAACACGCTCGAAATCCAAAACAGAACCCTCCCCGATCTTAAACTTTCTGGACAAGACGTCCCTGGCTCTCGTTACCACCCCCGAGATAGTAAAAACCGGATGTCCACTCTCAACCCAGAAAATCTTCATATTCATAAAATCGTTTGGCCTGTAACCCACGATTCTGCAACCGACAAAATGGGCATCCCCTTCATCTCTCGCCCTTTTGCACAATGCCAAACATCATCAGTCTATGAACAGCTCGTGATGGGAACGCAAGTACTTGACATTCGGGTTGACGAGAATGGCAATGTATGCCACGGAATTCTGATCGCGTACGAACTTCAGGTTGTGATGAATGATGTCAAAAAGTTTCTCTCTGAACCAAAGTCAGATATCATAATTCTCGAAATCAGAACAGAGAATGGGCGCAGGGACCCACCTGGATTTGATAAGTATCTGGTGGATCAATTAGGGGAGCTTCTGATTCACCAGGATGATAATGTATTTGAGAAGACGGTCGCGGAGCCTCATTTAAGCGTGGCCATCCAAAAGTCCATAACTCTTCTTCTTCTTCTGTGTGCTTTATCAAACTCTGCTACATCTGCTACAGAGATGGCCTCTCCTGCTTCCTTTTACGAGGTGCTTGGGATTTCAATGGGGGCTAGCTGCCAAGAAATAAAGAGTGCCTACAGAAAGCTTGCAAGAACATGTCACCCTGATGTGGTGGCCATGAATCACAAGGCAAGTACAAAAAATCTCTCGAGTACTCATCTCTGCCCTGGCAAAATATGGAGTCCATGTCAGGTTATCATCAAAGATTTGGCCAAGCTGGACATAAATGGGAGACGGATCAGTGTTGGTAACAGAACCAGAATCTATGCGGGCTTGGCTTGTAGCGTGTTACCGCCTCTTTGGCATTGGGGTCCAAGAGCCAAAACCAGAGAGAGAAACGAGATCCGAGCGGAGATGGGTGAGAGGGTGACTGGGAAGGTGAAGTGGTTCAGTGACCAAAAGGGTTTTGGCTTCATAACTCCTGACGATGGCGGCGAGGACCTCTTCGTCCACCAATCTGCGATCCGGGCGGAAGGGTTTCGCAGTCTCGGCGATGGAGAGTCTGTCGAGTTTCTGATCGAGTCCGACCCCGATGGCCGTACGAAGGCTGTCGACGTCACCGGCCCTGATGGGTCCGATGTTCAGGGGAGCCGACGCGGTGGAGGAGGTGCTGGAGGGAACAGATCCTACGGTGGCGGCCGTGGCGGTGGTTACGGAGGTGGCTACGGTGCTGGCGGCGGTTATGGTGGCAGTCGTGGTGGAAGAGGCGGAGGCGGTGGTGGTTATGGAGGCGGCGGTGGTTATGGCGGGGGTGGCGGCGGAGGTGGTTGTTATAACTGCGGTGAGGTCGGTCACCTGGCCAGGGATTGCTACCAGGGAGGCGGCGGAAGCGGCGGAGGCAGGTACGGCGGAGGCGGAGGCGGAGGTGGAGGGTGTTACACCTGTGGGGAGTCTGGGCATTTTGCCAGGGACTGCCCAACCGGCGCTCGCTGA 1563 0.5298 MGSAIATQIERRNTLEIQNRTLPDLKLSGQDVPGSRYHPRDSKNRMSTLNPENLHIHKIVWPVTHDSATDKMGIPFISRPFAQCQTSSVYEQLVMGTQVLDIRVDENGNVCHGILIAYELQVVMNDVKKFLSEPKSDIIILEIRTENGRRDPPGFDKYLVDQLGELLIHQDDNVFEKTVAEPHLSVAIQKSITLLLLLCALSNSATSATEMASPASFYEVLGISMGASCQEIKSAYRKLARTCHPDVVAMNHKASTKNLSSTHLCPGKIWSPCQVIIKDLAKLDINGRRISVGNRTRIYAGLACSVLPPLWHWGPRAKTRERNEIRAEMGERVTGKVKWFSDQKGFGFITPDDGGEDLFVHQSAIRAEGFRSLGDGESVEFLIESDPDGRTKAVDVTGPDGSDVQGSRRGGGGAGGNRSYGGGRGGGYGGGYGAGGGYGGSRGGRGGGGGGYGGGGGYGGGGGGGGCYNCGEVGHLARDCYQGGGGSGGGRYGGGGGGGGGCYTCGESGHFARDCPTGAR 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1295 520 Pfam 'Cold-shock' DNA-binding domain 334 398 IPR002059 GO:0003676
Lele34g1295 520 ProSitePatterns Cold-shock (CSD) domain signature. 346 365 IPR019844 -
Lele34g1295 520 Pfam DnaJ domain 217 254 IPR001623 -
Lele34g1295 520 MobiDBLite consensus disorder prediction 26 47 - -
Lele34g1295 520 ProSiteProfiles Cold-shock (CSD) domain profile. 332 398 IPR002059 GO:0003676
Lele34g1295 520 CDD CSP_CDS 333 398 IPR002059 GO:0003676
Lele34g1295 520 Gene3D - 326 410 IPR012340 -
Lele34g1295 520 Gene3D - 498 520 - -
Lele34g1295 520 Gene3D - 463 489 - -
Lele34g1295 520 Pfam Zinc knuckle 466 480 IPR001878 GO:0003676|GO:0008270
Lele34g1295 520 Pfam Zinc knuckle 501 516 IPR001878 GO:0003676|GO:0008270
Lele34g1295 520 MobiDBLite consensus disorder prediction 383 420 - -
Lele34g1295 520 SMART csp_8 334 399 IPR011129 GO:0003676
Lele34g1295 520 SMART dnaj_3 215 264 IPR001623 -
Lele34g1295 520 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 64 168 - -
Lele34g1295 520 SUPERFAMILY Retrovirus zinc finger-like domains 457 518 IPR036875 GO:0003676|GO:0008270
Lele34g1295 520 SUPERFAMILY Chaperone J-domain 211 248 IPR036869 -
Lele34g1295 520 Gene3D DnaJ domain 205 262 IPR036869 -
Lele34g1295 520 ProSiteProfiles Zinc finger CCHC-type profile. 467 480 IPR001878 GO:0003676|GO:0008270
Lele34g1295 520 SUPERFAMILY Nucleic acid-binding proteins 329 398 IPR012340 -
Lele34g1295 520 Gene3D Phosphatidylinositol (PI) phosphodiesterase 40 204 IPR017946 GO:0006629|GO:0008081
Lele34g1295 520 ProSiteProfiles Zinc finger CCHC-type profile. 502 516 IPR001878 GO:0003676|GO:0008270
Lele34g1295 520 PRINTS DnaJ domain signature 218 236 IPR001623 -
Lele34g1295 520 PRINTS DnaJ domain signature 236 251 IPR001623 -
Lele34g1295 520 PANTHER COLD SHOCK DOMAIN PROTEIN 2 330 517 - -
Lele34g1295 520 ProSiteProfiles dnaJ domain profile. 216 282 IPR001623 -
Lele34g1295 520 SUPERFAMILY PLC-like phosphodiesterases 43 188 IPR017946 GO:0006629|GO:0008081
Lele34g1295 520 PRINTS Cold shock protein signature 335 350 IPR002059 GO:0003676
Lele34g1295 520 PRINTS Cold shock protein signature 371 389 IPR002059 GO:0003676
Lele34g1295 520 PRINTS Cold shock protein signature 356 365 IPR002059 GO:0003676
Lele34g1295 520 CDD DnaJ 217 246 IPR001623 -
Lele34g1295 520 SMART c2hcfinal6 501 517 IPR001878 GO:0003676|GO:0008270
Lele34g1295 520 SMART c2hcfinal6 466 482 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1295 Lele-ChrLele34 20831024 20836968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1295 1 181 Acyl Lipid Metabolism Gene Families AT4G38690 61.538 1.01e-71 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele34g1295 CSD 1.3e-24 CL0021