Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1250 ATGACAAACCCTGCAGAGGATCCTCCTTTGCCATCACGGGGCATCCCGCCGTCGCCGTCGCATGCCACCGTCGAAGAGATGCCACTCGCCGGGAGAGATGACGCTGATGAAGCGAAGACCCTCCTACACTGTGACGAAGCCGAAGAGAAGCCCCCTTCTCCTTCTCTTCCCCCTGCTCCCAGGGAAGTGTCAGAGGAAATCAACGTAGCTGACATTGCTGTGGAGACCGAGAAGTTGGGGAAGAAGGCAGGCGAGGCTGTCATGTCAAATGAAAATGAGGAAGCCGAGAAAGTAGTTATGGGAATGGAGACAGCAGACACGTATGCAGCTTGCAGCTTAGGCAAGGCAGCTGAAGCAGCGGAGGCATGGAAGGTGGAAGAGGAAACCAATGTAGCTAACATTGCTGAGGACATTACAAAGGCAGAAGAGGAAGCCTATGTAGCTAACATTGCCGAGGACATTACAAAGGTTGAAGATGAAACTGATGTAGCTAAAATTGCTGAGGATAATAAGAAGGTGGAAGAGGAAACTGATGTTGCTAATATTGCTGATGATAATACGAAGGTGGAAGAGGAAACTAATGCAGCTAACATTGCTGAGGACATTACAAAGGTGAAAGAGGACGTAGATTTAGCTGACATTGTTGAAGGGGAGGTAGATGTGACCGCCATGTCATATGAGAAAGAGGAAGCAGAAAAACTTGTAGCTAGGATGGAGCCAGCAGACTCATATGTGGCTTGTTCACTAGGTGAGACAACTGAAGCCTTAGAGATCAGGGAGCTGGATGAAGTGGCAGGTGAAGATGGCATGCCAGATGAGAATGAGGAAGCTGAGAAAGTAGTAGTGGGGATGGAGATGGAAGACGGAACTGTGTCTTCCACTCTAGGTGATACAACTGAGGCAGACGAAGTTGGCATAGAGGCTGAAGATAAGGCAGAGGCAGCAGAGGTGTTGAATGTGATTGGCACAGGGGAAGGTACTACTGACACAGAAGAGGATGCAGATGGAGCTGATGGAAGGGAGGAGGCCCTAGAGGCAGAAGAGGTTGAGGTAGCCAATGAAGCAGATTTGATGGAAGAGGAAGTAGATGTTGCTGAAATGGCAGAATATACAGGGGGTGCTGAGTTGACTGAGGAGATGGAAATGGCTGAGGAGCAAGGTAGAAGTGTCAGCAGTGGCAAGAGGAAGCGTGGCAAGAGCTCAAAATCTGCAGGGAGAGTTCCAGTTAGAAAAAAGGTTGAAGAGGATGTTTGTTTCATATGCTTTGATGGGGGTGAGCTTGTGCTTTGTGATCGCAGGGGATGCCCAAAGGCTTATCATCCTACGTGTGTTAATCGTGATGATGCATTCTTTCGAGCAAAGGGTAAATGGAATTGTGGTTGGCATCTTTGCAGCAGCTGTGGGAAGAATTCTTACTACATGTGCTATACCTGTACGTTCTCTTTGTGCAAGGGTTGCATCAAAGATGCTGTCATCTTGTGTGTTAGGGGAAAGAATGGCTTTTGCGAGACATGTATGAGGACTGTAATGCTGATTGAACAGAATGAGCTGGGGAACAAGGACATGGGACAAGTGGATTTTGATGACAAAAGCAGCTGGGAGTATCTCTTCAAGGACTACTACACAGATCTAAAAGGGAAGCTATCTTTAACATATGATGAGCTTGCTCAAGCTAAAAACCCATGGAGGGGATCGGATATCCTTCTTACCAAGCAGGAATCACCTGATGAGCTCTATGATGCTAATAATGATGGGGGATCACATTCAGATAGCTCTTCTGAAAATGTAGAAAGCAGTAGTGTTAAAAGAAGAAAGGACAATAAACGATTGAAGTCCCGTTCCAAGGAGTTGAACTCACATTGCATGATGACATTGGTTGGGGACCAAGGGCCATCTGCAGATGAGAGGTCTGAGTGGGCATCAAAAGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGTGACAAATCTATTCTATCTCAGTTTGATGTGCAGGCTCTTCTGCTAGAGTATATTAAAAGAAACAAGCTCCGTGATCCTCGCCGAAAAAGTCAAATAATTTGTGATGCAAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTGGGTCATTTTGAAATGTTAAAGCTTCTTGAATCCCATTTCCTACTAAAAGAAGATTCCCAGACTGAAGATCAACAGGGGAGTGTTGTTGATACTGAAGTTAATCATTTGGAAGGTGATGGCAATATTGATTCCTATCCGAAGACTGGAAAAGACAAGAGACGTAAAACACGAAAAAAAAGTGATGAAAGAGGACTTCAATCCAATACTGATGATTACGCAGCTATTGATAATCATAATATTAATTTAATTTATCTAAGACGCAATTTGGTGGAAGAATTACTTGAAGATACAGATAAGTTTCATGATAAAGTTGTTGGGTCTTTTGTGAGAATAAGGATCTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGTAGGAACATGCAAAGCAGCTGAGACATATAAAGTTGGTAAAAGGATGACAGATACCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGGTTGTATCAATTGATATAATCTCAAATCAAGAGTTCACAGAGGATGAATGCAAGCGGCTGCGCCAGAGTATAAAGTGTGGGTTGATAAATCGGCTGACAGTGGGTGACATTCAAGACAAAGCAATGGCACTGCAAGCGGTCAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGAGGCTAAGTCACCTCCGTGATAGAGCCAGTGAGAAAGGACGGAGAAAAGAATATCCTTCCCTTGTGAACTTATTTATTTTTAAGGATAATGTATCTATTCTTTTAAAAACACCTGAGGAACGTCAACGAAGATTGGAGGAAATTCCAGAAATACACGCTGACCCTAACATGGATCCAAGTTATGAGTCTGAGGAAGAAGAAACTGATCCTAAACGACTAGAGAGTTACATGAGACCTAGAGGAACTGCATTTGATCGAAGGGGTAGAGAAATGGTTTCTCCTAGAACAGTTGGTTCTAATTCAAATGATACATGGAGTGGAGCAAGGAACTATTCTAATATTAATCGTGAGCTAACCAGAAATTTGTCTAATAAGGGACTCTCTGTTAGAGTTGATGATGTGTCTAATGCTTCTGACGTATTGAATGATGTTCAAAACCTCTGGGGGAGAGATAGGGAAACACAACTATCTAACAGCTGGGAGGGGCAAAAGCTATATTCGAGCTTAGATAGTGGCAAAAGTATCCAGCCTGTGGTAGCGTCCGAGTCTCTTTCTACTACTGTGTCCAATGCTTCTGCTGTATCATCTGTGAAAATGAATGAAACAGAAAAGATGTGGCATTATAAGGATCCATCTGGAAAAGTTCAGGGACCATTTTCAATGGCACAGTTACGTAAATGGAATAACACTGGATATTTTCCCGCTGATTTGAGAATTTGGAGAACCACTGAGAAACAAGACGAGTCTATACTCTTAACTGATGCCTTAGCTGGAAACTTTTCTAAGGAACCATCAGCAGTGGATAAAACTTTTCCGAAGGCTCAGATGGGGCATAATTTAAATTATTCAGCCTCACACTCTGGGAAGCTTCATTTGCCTGCACAACAAGGTGTAGATGCTCAAGTTGGAGGAAGATCAACATTTGATCAGAGTAGTGGGTCCTATAATTCACATAATGCTATGGGTTCTCTCGGCCAAACCACTGGAGGAAGTTGGAGATTTGAAGATAATAATTCTGTAGCAAATAGACCTTCTCCAATGACGGTTGATATTCCCAAGATGCCTACAAATGTTCGGGGGCCTGATGTTGGTGTTAGAATTGAATCAAGGAATCTTCCTTCTCCTACTCCTCAGACTACCTCTTACGGGACTAAAGGACAGGCTTTTGAAAGTAAATGGTCACCTACTCCTGTCCACTCTGCCGGGTCTCTTGTAGGGAGTCCTTTTCCTGGAGGTCATGGAAGCTTGCAGGCCCCTGTCGCGGCAGAGAAAGTGGTGCAAAGTGCTGATAGTGGTTCAAGTTCACAACCTGCCAAGATTCCCGCCCCACATCCTGGTATTCCTCTTGGTCATCCTCAAGCAACAATAGTGGCAGCTATTACAGCAGATTCCTCAAGGAATACAGGTTCTGACAGTAAAACTGCAAGTATGCAAAAGCTGGCTATGAGCGACCATAATTCTCATGCTGGAGCTCAAGGTTGGGGATCTGCTTTAGTTCAGAAACCTGAAATGGCTGGTGCAATTCAGATACGAGGTGGGGAACCACAGGCCTGGGGAGGTGTCCATTCAAGGGTAGAATCAAATAATCCTGCTGCTATGCCTGCCCAACCACCACTGGCTCATGGCCACTGGGCCGATGCTTCATCTATCCAGAATGCTACCTCGTTTAACACTGGAAATCCAATGGGGAATTTCCCCATGCCCAGCATTCAAGACCTGAGACCGCCAACTTCAAGTAATCAACCTAACGTTCCTGCTTCTTTGCCACCGAACGTGCCTTGGGGCATTACTGTTGCAGAAAATCAAAGTACTAGTTGGGGGGTAATACCTGGAAATCCAAATCTAAATTGGGGGGCACCTCCAGCTGCCAATATGAACATGAATTGGATTCCTGGCCAGGGTCCGGCACCGGGAAACACAAATCCAGGATGGGCTGCTCCTAGTCAGGGACCATCTTCAGCAATGCCTACTGGTTGGGTGGCACCTGGTCAAGGCCATCCTAATGCTAATGGAGGTTGGGTTGTGCCTGGTCAAGGTCCGGCACCTGTTGGTGCTAATCCTGCCAATGCTGGTTGGGTTGCGCCGGCAGGGGGCCAAGGCATGTGGGGAAATGAACAAAATCATAATGGAGACAGGTTCCCAAACCATAGGGATCGTGGTCCTCATGGTGGTGAATCAGGCTATGGAGGAGATAAAACATGGAACAGGCAATCTTCGTTTGGTAGTGCCGGCCGGGGAGGAGGTTCTTCAGGGCCTCCTTTCGGGGGGCAGAGAGGAGTGTGCAGGTTCCACGAGAGTGGACACTGCAAGAAAGGAGCTTTTTGTGACTATCTGCACAATTGA 5094 0.4527 MTNPAEDPPLPSRGIPPSPSHATVEEMPLAGRDDADEAKTLLHCDEAEEKPPSPSLPPAPREVSEEINVADIAVETEKLGKKAGEAVMSNENEEAEKVVMGMETADTYAACSLGKAAEAAEAWKVEEETNVANIAEDITKAEEEAYVANIAEDITKVEDETDVAKIAEDNKKVEEETDVANIADDNTKVEEETNAANIAEDITKVKEDVDLADIVEGEVDVTAMSYEKEEAEKLVARMEPADSYVACSLGETTEALEIRELDEVAGEDGMPDENEEAEKVVVGMEMEDGTVSSTLGDTTEADEVGIEAEDKAEAAEVLNVIGTGEGTTDTEEDADGADGREEALEAEEVEVANEADLMEEEVDVAEMAEYTGGAELTEEMEMAEEQGRSVSSGKRKRGKSSKSAGRVPVRKKVEEDVCFICFDGGELVLCDRRGCPKAYHPTCVNRDDAFFRAKGKWNCGWHLCSSCGKNSYYMCYTCTFSLCKGCIKDAVILCVRGKNGFCETCMRTVMLIEQNELGNKDMGQVDFDDKSSWEYLFKDYYTDLKGKLSLTYDELAQAKNPWRGSDILLTKQESPDELYDANNDGGSHSDSSSENVESSSVKRRKDNKRLKSRSKELNSHCMMTLVGDQGPSADERSEWASKELLEFVMHMRNGDKSILSQFDVQALLLEYIKRNKLRDPRRKSQIICDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQTEDQQGSVVDTEVNHLEGDGNIDSYPKTGKDKRRKTRKKSDERGLQSNTDDYAAIDNHNINLIYLRRNLVEELLEDTDKFHDKVVGSFVRIRISGSGQKQDLYRLVQVVGTCKAAETYKVGKRMTDTLLEILNLNKTEVVSIDIISNQEFTEDECKRLRQSIKCGLINRLTVGDIQDKAMALQAVRVKDWLETEIVRLSHLRDRASEKGRRKEYPSLVNLFIFKDNVSILLKTPEERQRRLEEIPEIHADPNMDPSYESEEEETDPKRLESYMRPRGTAFDRRGREMVSPRTVGSNSNDTWSGARNYSNINRELTRNLSNKGLSVRVDDVSNASDVLNDVQNLWGRDRETQLSNSWEGQKLYSSLDSGKSIQPVVASESLSTTVSNASAVSSVKMNETEKMWHYKDPSGKVQGPFSMAQLRKWNNTGYFPADLRIWRTTEKQDESILLTDALAGNFSKEPSAVDKTFPKAQMGHNLNYSASHSGKLHLPAQQGVDAQVGGRSTFDQSSGSYNSHNAMGSLGQTTGGSWRFEDNNSVANRPSPMTVDIPKMPTNVRGPDVGVRIESRNLPSPTPQTTSYGTKGQAFESKWSPTPVHSAGSLVGSPFPGGHGSLQAPVAAEKVVQSADSGSSSQPAKIPAPHPGIPLGHPQATIVAAITADSSRNTGSDSKTASMQKLAMSDHNSHAGAQGWGSALVQKPEMAGAIQIRGGEPQAWGGVHSRVESNNPAAMPAQPPLAHGHWADASSIQNATSFNTGNPMGNFPMPSIQDLRPPTSSNQPNVPASLPPNVPWGITVAENQSTSWGVIPGNPNLNWGAPPAANMNMNWIPGQGPAPGNTNPGWAAPSQGPSSAMPTGWVAPGQGHPNANGGWVVPGQGPAPVGANPANAGWVAPAGGQGMWGNEQNHNGDRFPNHRDRGPHGGESGYGGDKTWNRQSSFGSAGRGGGSSGPPFGGQRGVCRFHESGHCKKGAFCDYLHN 1697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1250 1697 Gene3D - 777 905 IPR036128 GO:0003677
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1 65 - -
Lele34g1250 1697 Pfam GYF domain 1123 1165 IPR003169 GO:0005515
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1627 1642 - -
Lele34g1250 1697 ProSiteProfiles Zinc finger C3H1-type profile. 1672 1697 IPR000571 GO:0046872
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1469 1505 - -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 578 614 - -
Lele34g1250 1697 SMART swib_2 648 719 IPR019835 -
Lele34g1250 1697 SMART gyf_5 1121 1176 IPR003169 GO:0005515
Lele34g1250 1697 SUPERFAMILY SWIB/MDM2 domain 638 715 IPR036885 -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 374 407 - -
Lele34g1250 1697 ProSiteProfiles Plus3 domain profile. 775 908 IPR004343 GO:0003677
Lele34g1250 1697 Pfam Plus-3 domain 780 883 IPR004343 GO:0003677
Lele34g1250 1697 ProSiteProfiles GYF domain profile. 1120 1174 IPR003169 GO:0005515
Lele34g1250 1697 MobiDBLite consensus disorder prediction 721 766 - -
Lele34g1250 1697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 509 IPR013083 -
Lele34g1250 1697 Pfam SWIB/MDM2 domain 641 714 IPR003121 -
Lele34g1250 1697 SUPERFAMILY Plus3-like 776 905 IPR036128 GO:0003677
Lele34g1250 1697 SUPERFAMILY FYVE/PHD zinc finger 399 463 IPR011011 -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1288 1312 - -
Lele34g1250 1697 FunFam Zinc finger CCCH domain-containing protein 19 776 905 - -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 27 50 - -
Lele34g1250 1697 SUPERFAMILY GYF domain 1110 1173 IPR035445 -
Lele34g1250 1697 Gene3D - 1121 1180 IPR035445 -
Lele34g1250 1697 Gene3D SWIB/MDM2 domain 628 724 IPR036885 -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1469 1498 - -
Lele34g1250 1697 CDD SWIB-MDM2_like 639 714 - -
Lele34g1250 1697 FunFam Zinc finger CCCH domain-containing protein 19 408 507 - -
Lele34g1250 1697 SMART rtf1 775 885 IPR004343 GO:0003677
Lele34g1250 1697 Coils Coil 341 361 - -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1648 1662 - -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 968 989 - -
Lele34g1250 1697 ProSiteProfiles Zinc finger PHD-type profile. 415 481 IPR019787 -
Lele34g1250 1697 ProSiteProfiles SWIB/MDM2 domain profile. 633 716 IPR003121 -
Lele34g1250 1697 CDD GYF 1120 1175 IPR003169 GO:0005515
Lele34g1250 1697 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 332 1697 - -
Lele34g1250 1697 FunFam Zinc finger CCCH domain-containing protein 19 1122 1179 - -
Lele34g1250 1697 ProSitePatterns Zinc finger PHD-type signature. 418 478 IPR019786 -
Lele34g1250 1697 SMART PHD_3 417 463 IPR001965 -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1220 1262 - -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1620 1669 - -
Lele34g1250 1697 MobiDBLite consensus disorder prediction 1220 1312 - -
Lele34g1250 1697 CDD PHD5_NSD 417 462 - -
Lele34g1250 1697 Coils Coil 124 144 - -
Lele34g1250 1697 FunFam Zinc finger CCCH domain-containing protein 19 626 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1250 Lele-ChrLele34 20616998 20626344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1250 370 486 PHD Transcription Factor Family AT5G58610 28.125 5.53e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lele34g1250 Plus-3 2.2e-23 No_clan