Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1241 ATGTCCGTAATTTTTTTTTCTTGGCTTGCTTCTGTCTTCATCTGGTTTTCTTGGTTTTTTCTGTTCTTAAATTACAAAATTCCACTCCCTCCCCATTCTCCGCTAAAACTAACAGACACTACACAAGCCAGACCCAGATCTCATCTCAATAGAGGTCTGAAAATCCGTCTTCTCTCTCCACTTTCGATCCAATTCTCCTCTTTTGCTAATCTCTGCAACTTCTATCTACATATATGCATGTTAATGCAGATGTTGACGAAGTTCGAGACCAAAAGTAATAGAGTGAAGGGGCTTAGTTTCCACAGCAAGAGACCGTGGATCCTTGCGAGTCTTCACAGTGGCGTGATCCAGCTATGGGACTACCGAATGGGCACCCTGATTGACAGATTCGATGAGCATGATGGGCCTGTTCGAGGTGTTCATTTCCATAAATCTCAGCCTCTCTTTGTTTCTGGAGGGGATGATTACAAGATTAAGGTTTGGAACTACAAGTTGCACAGATGTTTGTTTACTCTTTTAGGACACCTTGATTATATTCGTACAGTGCAATTTCATCACGAAAACCCATGGATTGTGAGTGCTAGTGATGACCAGACCATTCGCATTTGGAACTGGCAGTCACGTACCTGTATTTCTGTTTTAACTGGCCACAACCATTACGTTATGTGTGCTTTGTTCCACCCAAAAGAGGATCTTGTTGTGTCAGCCTCCTTGGATCAGACTGTTCGTGTATGGGATATTGGTGCTCTCAAGAGGAAGTCTGGGTCTCCCGCAGATGACATACTGCGACTGAGTCAAATGAACACAGATCTCTTTGGTGGCGTTGATGCCGTTGTTAAGTACGTCTTGGAAGGTCATGATCGTGGTGTCAATTGGGCTTCATTTCATCCCACACTGCCCCTCATTGTCTCAGGAGCTGATGACCGGCAAGTGAAACTCTGGAGGATGAATGACACTAAAGCGTGGGAAGTTGACACATTGAGAGGGCACATGAATAATGTTTCATGCGTTATGTTCAATGCCAAACATGATATCATTGTGTCAAATTCTGAGGATAAAAGCATTCGTGTATGGGATGCAACAAAGCGGACTGGAATTCAAACATTCCGCCGAGAGCATGACCGATTTTGGATTCTTGCAGCACATCCTGAAATGAATCTGTTGGCAGCTGGTCATGACAGTGGTATGATTGTCTTTAAGCTGGAGAGAGAAAGGCCAGTTTTTGCAGTTACTGGTGACTCTATGTTCTTCACAAAAGATAGGTTTTTACGTTTTCATGAATTTTCAACGCAGAGAGAGACACAAGTACTCCCAATTCGACGACCTGGTTCTTTAAGCCTCAATCAAAGCCCAAAGACTCTTTCTTATAGCCCAACTGAAAATGCTGTTCTTCTTTGTTCGGATGTTGATGGTGGATCTTATGAGTTGTACTCTATATCCAAGGACAGTTTGGGTAGGGGTGACATGCAAGAAGCAAGGAGAGGACTGGGAGGATCAGCAGTCTTTGTGGCTCGAAACAGATTTGCTGTGCTTGACAAAAGCAACAACCAAGTCCTAGTAAAGAATTTGAAGAATGAGCTCGTTAAAAAAAGTGCCCTCCCAATTCCCACCGATGCTATTTTCTATTCTGGAACAGGGAACTTGCTGTGTAGGTCAGACGACAGGGTTGTTATATTTGATCTTCAGCAGAGGATTGTTGTTGGTGATCTTCAAACCCCTTTTATTAAGTATGTCGTCTGGTCTAACGATATGGAAAATGTTGCCTTACTCAGCAAGCATGCCATTATTATTGCAAGCAAGAAGCTTGTGCACCAGTGCACACTCCATGAAACAATTCGTGTAAAAAGTGGAGGCTGGGATGACAATGGCGTATTTATTTACACAACATTAAATCACATCAAATACTGTCTTCCTAACGGGGATAGTGGAATAATTAAAACACTTGATGTCCCCATTTATATTGCGAAGGTTTCTGGGAACACAATATTCTGCTTGGATCGGGATGGTAAATGCAAATCTGTTGTCATTGATGCGACTGAATATATTTTTAAACTCTCTCTGTTAAAGAAAAGATATGATCTTGTCATGAGTGTGATAAGGAATTCACAGCTTTGTGGGCAGGCTATGATTGCTTATCTACAACAGAAAGGATTTCCTGAGGTTGCCCTCCATTTTGTGAAAGATGAGAGAACTCGGTTTAATTTGGCTTTAGAGAGTGGGAACATTCAAACTGCAGTTGCATCAGCTACAGCAATTGATGAGAAAGATCATTGGTATCGTTTGGGGGTTGAGGCACTTCGTCAAGGAAATGCTGGTATAGTAGAGTATGCATACCAGAGGACCAAAAATTTTGAGAGACTGTCTTTCCTTTATCTCATCACTGGTAACATGGACAAACTTTCCAAGATGTTGAAAATCGCTGAAGTTAAAAATGATGTGATGGGTCAGTTTCACAATGCCTTGTATCTGGGTGATGTCTACGAGCGTGTTAAGATTTTGGAATCCGTGGGTCATTTGCCTCTTGCTTATGTCACTGCATCAGTCCATGGGCTACGTGATGTCGCTGAACGTATTGCAACTGAACTGGGGGAGAATGTCCCACCTTTGCCTGATGGAAAAATGCCGTCCCTTTTGATGCCACCATCGCCTGTCATTTGCGGTGGTGATTGGCCCCTTCTAAGGGTCATGCGAGGCATCTTTGAAGGGGGCTTTGACAATATTGGTCAGGCTTCTACTGATGAAGAGTACGAGGCTGCTGATGGGGATTGGGGTGAGGAGCTTGACATGGTTGATGTAGATGGTTTACAGAATGGAGACGTTTCTGCAATTTTGGAGGATGGAGAAGTGCGTGAAGATAATGATGAAGAGGGTGGATGGGAGATGGAAGATTTAGAGCTGCCTCCTGAAGCTGACACCCCAAAAGCTTCCTCTGGTATGCGATCTTCAGTTTTTGCTGCCCCGCAACCTGGCATGCCAGTAAGCCAGATATGGATACAGAGTTCATCTCTTGCAGCTGATCATGCTGCTGCTGGCAATTTTGAGACTGCAATGAGGCTACTGAACCGACAACTTGGGATTAAAAATTTTGCCCCCTTGAGATCCATGTTTCTTGATCTTTATAGCAGCAGTCATTCCTATCTGCTTGCATTTTCGTCTGCCCCAATAATAACACTTGCAGTTGAAAGAGGTTGGACTGAGTCATCTAGTCCAAATGTAAGAAGCCCACCTGCTCTTCCTTTCAAATTGTCCCAATTGGATGAAAAGCTCAAAGCTGGTTATAAGTTAACAACAGCCGGGAAGTTCACTGAAGCTCTACGGACAATCATTAATATCCTTCACACAATCCCTTTGATTGTTGTTGAGTCAAGGAGAGACGTAGATGATGTGAAGGAATTGATTATCATAGTCAAAGAGTATGTTTTGGGTCTGAAGATAGAGCTGAAGAGGAGGGAAATTAAGGATGACCCAGCACGTCAGCAGGAACTTGCAGCATATTTCACCCATTGCAACATTCAGACCCCTCACTTGAGGCTGGCTTTGCTGAATGCAATGTCTGTCTGCTACAAGGCAAAGAACCTTGCCACAGCTGCAAACTTCGCTAGGAGGCTACTTGAGACCAATCCTACTATTGAAAACCAAGCTAAAACTGCTAGGAAAGTACTGGCAGCTGCAGAAAGGAATATGACTGATGCCACACAACTGAACTATGATTTCCGAAACCCATTTGTGACTTGTGGTGCAACCTATGTACCAATCTATCGAGGACAGAAGGATGTCTCATGCCCATATTGCATGTCCCGTTTTGTGACAAGCCAAGAGGGGCAGCTTTGTGCCGTGTGTGATCTTGCAGTGATAGGTGCTGATGCTTCTGGATTACTCTCTTCACCTTCCCAAGTAAGGGTACCTAACTTGCTTGAGTTGCGGTTCTTGCAGATTCATTCGGCAAGATACCTTTCATTTGTGTTTAGTCGAGGTTTCATTCATTTAGTTATGGAAGAAGGAAGAGAAGTAGTGAGGAGCAGTACTGGGAATAAGTGCCAAGACTGTGGGAACCAGGCGAAGAAAGGTTGTGAGTACAAGAGATGTAGAAGTTGCTGTAACAACAAAGGGTTTGAGTGTGAAACACATGTTCACAGCACTTGGGTTCCTGTAGATCATAGAAGAAGCCATAGAGAGCATCATCATCCTCATTTCCCTAAAAGGCACAAACCCTATCCCCCAGATAAAAGGGATCAGTTCAAGTTTCCAGGTTTGGTGAGTATGACGGCGATGTTTCGGGGCGTGCAAGTGAGGTCAAATGATGATTGTGTGAATGAATTTGCGTACCATACGGCACTGAGGATTGGAGGGCATGTGTTTTGTGGTCTTCTTTATGATCAAGGCCCTTCTCATCATCAAGACCATGGTGTTGCTGAGAGTTCTTCAGTTCCTCTTCTTCAGCATAACAATCTAATAAAAAACGTAGCAACACAGACGACCCATATTGATGCTGCAACAATGGCTCCTCCATTATTATTATCATCTTCTTCTTCTTCTGCTCGTGACTCTATCTTTCATTATCCAACATATCCTTTTACCCGACCTGCTATGCCTTATTTCTCTAACCCCCAACCTTAG 4617 0.4353 MSVIFFSWLASVFIWFSWFFLFLNYKIPLPPHSPLKLTDTTQARPRSHLNRGLKIRLLSPLSIQFSSFANLCNFYLHICMLMQMLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCALFHPKEDLVVSASLDQTVRVWDIGALKRKSGSPADDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWASFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFNAKHDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILAAHPEMNLLAAGHDSGMIVFKLERERPVFAVTGDSMFFTKDRFLRFHEFSTQRETQVLPIRRPGSLSLNQSPKTLSYSPTENAVLLCSDVDGGSYELYSISKDSLGRGDMQEARRGLGGSAVFVARNRFAVLDKSNNQVLVKNLKNELVKKSALPIPTDAIFYSGTGNLLCRSDDRVVIFDLQQRIVVGDLQTPFIKYVVWSNDMENVALLSKHAIIIASKKLVHQCTLHETIRVKSGGWDDNGVFIYTTLNHIKYCLPNGDSGIIKTLDVPIYIAKVSGNTIFCLDRDGKCKSVVIDATEYIFKLSLLKKRYDLVMSVIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQTAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNMDKLSKMLKIAEVKNDVMGQFHNALYLGDVYERVKILESVGHLPLAYVTASVHGLRDVAERIATELGENVPPLPDGKMPSLLMPPSPVICGGDWPLLRVMRGIFEGGFDNIGQASTDEEYEAADGDWGEELDMVDVDGLQNGDVSAILEDGEVREDNDEEGGWEMEDLELPPEADTPKASSGMRSSVFAAPQPGMPVSQIWIQSSSLAADHAAAGNFETAMRLLNRQLGIKNFAPLRSMFLDLYSSSHSYLLAFSSAPIITLAVERGWTESSSPNVRSPPALPFKLSQLDEKLKAGYKLTTAGKFTEALRTIINILHTIPLIVVESRRDVDDVKELIIIVKEYVLGLKIELKRREIKDDPARQQELAAYFTHCNIQTPHLRLALLNAMSVCYKAKNLATAANFARRLLETNPTIENQAKTARKVLAAAERNMTDATQLNYDFRNPFVTCGATYVPIYRGQKDVSCPYCMSRFVTSQEGQLCAVCDLAVIGADASGLLSSPSQVRVPNLLELRFLQIHSARYLSFVFSRGFIHLVMEEGREVVRSSTGNKCQDCGNQAKKGCEYKRCRSCCNNKGFECETHVHSTWVPVDHRRSHREHHHPHFPKRHKPYPPDKRDQFKFPGLVSMTAMFRGVQVRSNDDCVNEFAYHTALRIGGHVFCGLLYDQGPSHHQDHGVAESSSVPLLQHNNLIKNVATQTTHIDAATMAPPLLLSSSSSSARDSIFHYPTYPFTRPAMPYFSNPQP 1538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1241 1538 Pfam Coatomer (COPI) alpha subunit C-terminus 897 1300 IPR010714 GO:0005198|GO:0005515|GO:0006886|GO:0016192|GO:0030126
Lele34g1241 1538 Pfam Domain of unknown function (DUF702) 1343 1463 - -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 327 359 - -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats profile. 327 368 IPR001680 GO:0005515
Lele34g1241 1538 Pfam WD domain, G-beta repeat 281 314 IPR001680 GO:0005515
Lele34g1241 1538 Pfam WD domain, G-beta repeat 128 162 IPR001680 GO:0005515
Lele34g1241 1538 Pfam WD domain, G-beta repeat 209 246 IPR001680 GO:0005515
Lele34g1241 1538 Pfam WD domain, G-beta repeat 324 359 IPR001680 GO:0005515
Lele34g1241 1538 Pfam WD domain, G-beta repeat 167 204 IPR001680 GO:0005515
Lele34g1241 1538 MobiDBLite consensus disorder prediction 1387 1407 - -
Lele34g1241 1538 MobiDBLite consensus disorder prediction 947 980 - -
Lele34g1241 1538 Pfam Coatomer WD associated region 431 850 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Lele34g1241 1538 SUPERFAMILY WD40 repeat-like 83 398 IPR036322 GO:0005515
Lele34g1241 1538 FunFam Coatomer subunit alpha 722 894 - -
Lele34g1241 1538 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 1414 1462 IPR006511 -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 317 - -
Lele34g1241 1538 SUPERFAMILY DPP6 N-terminal domain-like 328 647 - -
Lele34g1241 1538 PANTHER COATOMER 83 412 - -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats profile. 172 213 IPR001680 GO:0005515
Lele34g1241 1538 SMART WD40_4 165 204 IPR001680 GO:0005515
Lele34g1241 1538 SMART WD40_4 81 120 IPR001680 GO:0005515
Lele34g1241 1538 SMART WD40_4 320 359 IPR001680 GO:0005515
Lele34g1241 1538 SMART WD40_4 276 315 IPR001680 GO:0005515
Lele34g1241 1538 SMART WD40_4 362 400 IPR001680 GO:0005515
Lele34g1241 1538 SMART WD40_4 123 162 IPR001680 GO:0005515
Lele34g1241 1538 SMART WD40_4 207 246 IPR001680 GO:0005515
Lele34g1241 1538 FunFam Coatomer subunit alpha 84 402 - -
Lele34g1241 1538 CDD WD40 92 400 - -
Lele34g1241 1538 MobiDBLite consensus disorder prediction 948 966 - -
Lele34g1241 1538 PRINTS G protein beta WD-40 repeat signature 191 205 IPR020472 -
Lele34g1241 1538 PRINTS G protein beta WD-40 repeat signature 233 247 IPR020472 -
Lele34g1241 1538 PRINTS G protein beta WD-40 repeat signature 346 360 IPR020472 -
Lele34g1241 1538 Gene3D - 722 894 - -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 172 204 - -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 214 247 - -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 171 IPR001680 GO:0005515
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 130 162 - -
Lele34g1241 1538 ProSitePatterns Trp-Asp (WD) repeats signature. 233 247 IPR019775 -
Lele34g1241 1538 MobiDBLite consensus disorder prediction 1388 1403 - -
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats profile. 214 247 IPR001680 GO:0005515
Lele34g1241 1538 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 324 IPR001680 GO:0005515
Lele34g1241 1538 Coils Coil 1214 1234 - -
Lele34g1241 1538 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 1345 1386 IPR006510 -
Lele34g1241 1538 Gene3D - 82 402 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1241 Lele-ChrLele34 20528643 20538659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1241 1346 1469 C2H2 Transcription Factor Family AT5G66350 42.282 3.52e-30 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele34g1241 Coatomer_WDAD 3.8e-129 CL0186