Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1235 ATGGCAACTTATTTGCCAAATTCATATTCTGACACACCGATCACCTCTAGTAATATAACCTTGTATATGAACTCTGGTTCGTATCCCGAAGCATTCTCTGGAAATTCTCAGGAGCAAAATGGCTGCTTTGTGATCCCACAAATGAGTTTGTCACAACCAGCCCCAGAACAGCAAGAAATCTTAGCAAATCTTGATGGGTTACAAACTGGGGACTATGATTTCACTGCATGGAGACAAGGGAGAAATGAGATGCTAGTAACTCATCCAATGGATGGACATAACTTGCAGAGCCAGGGATTATCTCTTAGCCTTGGAACCCAAACACCATCAGGAATCCAAGTGTCTCCTTTCCATGATCAAAGTTCTAATCCGAGTTTCGATTCGTTTTTAGGTCAAAATCCATCGATTTCAGGCCATAAAAGCAGCTCATCTAGGCATGAATGTATGAGGCACAGTGAAATTTTGCCTTCTGATTTACCTGAAGCTAGTCAAGTTTTGAATAGAGGGGATTATTCTTTGCATGGGATGCCAAATGTTTCAAGAACAATTCCGAATTCCAAGTACCTCAAGGCGGCACAAGAGCTACTTGATGAAGTTGTTGACATCCAAAAAGCAATGAAACAACCCAATGTGAAAAGTCCTAGCACACGCGAGAAAAAGACTTTTAAGGAGAATGATGGAAGACTAGAAAATGAAAGGGCAGCTGCTAATGGAGAGCCTAACCCTCAAGATTTAGCCGGCAACGCCTCTTGTGAGCTTTCGCATGCTGAAAAACAAGATCTGCAGAACAAGTTAACAAAGCTACTGTCCATGCTGGATGAGGTTCACAGTAGGTACAAACAATATTATCATCAGATGCAGATTGTGGTATCGTCATTTGATGTGATAGCAGGACGTGGGGCAGCTAAACCATACACGTCGCTAGCTCTACAAACCATTTCGCGCCATTTCCGGTGCTTGCACGATGCAATTACCGGCCAGATCAGTGCAACACAGAAGTGCCTTGGAGAGCAAGATTCTGCCGGAAACAATAAAGGAGTTGGAATATCAAGACTTCGGTATGTTGACCAACAACTCCGGCAACAGAGGGCTCTTCAGCAGCTGGGAGTGATGCATCATGCATGGAGGCCACAGAGGGGCCTACCAGAAGGCTCTGTTTCAATTCTTCGCGCTTGGCTTTTCGAACATTTCCTTCATCCCTACCCCAAAGATTCTGAAAAGGCAATGCTAGCAAGGCAGACAGGTTTGACTAGAAGTCAGGTCTCAAATTGGTTTATAAATGCACGAGTTCGTCTTTGGAAACCTATGATTGAGGAGATGTACAAGGAAGAAATTGGAGATGCCGACTTGCACTCCAGTTCTTCAACTGAAGATGCATCCAAGGTAAGCAAAAGCGATGTCAAGATCTCCGATGATGGGTGTGATGATTTACAACAGAGCCAGAGTTCAATAGCAGCCGACAAGGCTAAGGACTTGAGATCTGATAAGCAAACTGAGGAGCAACAGCAAAGGCTCAGCTTTGATGACTGTAGTGTCTTCCAAGATGACACAGTTGTTCAGACTAATGAAGGCGGTGCAGTGTTTGTAGCGGTTGCTCCGGCGTGCCAAATGTCCGAGTTGGGGAGGTTTCAGCCTGGAAAAGGCGGTGTGTCACTGACATTAGGCTTGCAGCATTGTGAAGTTGGTGATTTTATGTCCGGTGAGAGCCGTCATAGCTTCGTCGTCATGGGGGAGGATGGTATTTACAATGCTGCCTCAGCTGCTACCATTGGAGCTCAGACATCAGAACTTGATTATGTAGCTGCTGGAAACCAGCACCAAAGTTTCACTTCGCCTCATTAA 1842 0.4501 MATYLPNSYSDTPITSSNITLYMNSGSYPEAFSGNSQEQNGCFVIPQMSLSQPAPEQQEILANLDGLQTGDYDFTAWRQGRNEMLVTHPMDGHNLQSQGLSLSLGTQTPSGIQVSPFHDQSSNPSFDSFLGQNPSISGHKSSSSRHECMRHSEILPSDLPEASQVLNRGDYSLHGMPNVSRTIPNSKYLKAAQELLDEVVDIQKAMKQPNVKSPSTREKKTFKENDGRLENERAAANGEPNPQDLAGNASCELSHAEKQDLQNKLTKLLSMLDEVHSRYKQYYHQMQIVVSSFDVIAGRGAAKPYTSLALQTISRHFRCLHDAITGQISATQKCLGEQDSAGNNKGVGISRLRYVDQQLRQQRALQQLGVMHHAWRPQRGLPEGSVSILRAWLFEHFLHPYPKDSEKAMLARQTGLTRSQVSNWFINARVRLWKPMIEEMYKEEIGDADLHSSSSTEDASKVSKSDVKISDDGCDDLQQSQSSIAADKAKDLRSDKQTEEQQQRLSFDDCSVFQDDTVVQTNEGGAVFVAVAPACQMSELGRFQPGKGGVSLTLGLQHCEVGDFMSGESRHSFVVMGEDGIYNAASAATIGAQTSELDYVAAGNQHQSFTSPH 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1235 613 MobiDBLite consensus disorder prediction 206 245 - -
Lele34g1235 613 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Lele34g1235 613 MobiDBLite consensus disorder prediction 448 473 - -
Lele34g1235 613 MobiDBLite consensus disorder prediction 485 505 - -
Lele34g1235 613 Gene3D - 371 449 - -
Lele34g1235 613 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 458 - -
Lele34g1235 613 MobiDBLite consensus disorder prediction 488 503 - -
Lele34g1235 613 Coils Coil 258 278 - -
Lele34g1235 613 SMART HOX_1 375 439 IPR001356 GO:0003677
Lele34g1235 613 MobiDBLite consensus disorder prediction 213 233 - -
Lele34g1235 613 CDD homeodomain 375 436 IPR001356 GO:0003677
Lele34g1235 613 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Lele34g1235 613 SUPERFAMILY Homeodomain-like 377 442 IPR009057 -
Lele34g1235 613 SMART prehox3 177 326 IPR006563 -
Lele34g1235 613 Pfam Associated with HOX 183 325 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1235 Lele-ChrLele34 20486424 20489220 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1235 54 611 Homeobox Transcription Factor Family AT4G34610 44.677 5.83e-129 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele34g1235 POX 4.9e-49 No_clan