Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1234 ATGAAACGTGGTAGAAAGTCTTACAAGAGTCTCAGATCATTACTCGAACAAGGGTTATCTTATAACAAGTCTGCAGTTCCATCCACGACTATGAGATATTTGCCAATTGGTCAGTTTTCAGGTCATCGGCCAATTAACGCTTTTCCGTTGCCATTTATGGAGTCACCAGCAGTTGGTTTGCTGCCGGCTAAACGACCTGCAGATGGATGTAATTCAGAGAAACACAAAAGATTAAAAGTTGTAGACTATAGCAATCCATATGCAATTGCGGACTTGCTGGATGGCCTGAACCACGGAAAATTTGGAAGTGTCACCAAGGAAATAGAGTCCCTTATAGCTCAAAAGATGCGGACATTGAGCCCTATATTTGCAAAAGATCCTGCACTTCTACAGTTTGTGAAAGTGGGAATGAATCGTGATGAAGAAGCTGCTAAGAAAATCATAGATTTGGAGGATAATCCCATGACAAAGACTGCTTCAAAAGCATCATCAACTGTTGTAATTATTGATTCAGATGAGGAAGATGATAGAGATAAGAAACCTTGTCTGCCATTTCAAGAAGTTATACTGCCAAAACCTGCTGTCTGGTCTACTACAAAAGACATAGTTGGGTACCATGGTCCCAATGCACATCTTCCTCCTATTGGGTCTCATGCTGGAAGTCTAGATGTAAAACCTGAACCTTTTCTCATTGGCAAAGACGACACTGGAAAAGATAAAGGTGCTTTTATTGGTGTTCAAGAGGGAGACAGTCCACAGGCTGACACAAAGGATGATGGGCTAGAAGATATTTGGAGGGAGATGTCAATGGCAATAGAATGTTCCAAAGATGTTGATATGGATTCTCTACATGATGAAGCTGAAAAGGGTGTGGATGACTGTGATCACTCTTATGTTTTAAAAGATGATCTTGGTTATGTTTGTCGCGTTTGTGGGGTTATCAGCAGAGGAATCGAAACCATATTTGAATTCCAGTACAAGGTTAAAAAAAGTACAAGAACTTACATGGCTGATTCACGGAATTCCAAAGAGAGAGCATTGCCTGATGTATCGGGACTTAAATTTGGTGAAGATGGTCTGGTGATATCTGAACTCTCTGCCCACCCCAGGCATATGAAACAAATGAAACCCCATCAAATTGAAGGATTTAATTTTCTTGTACGAAACCTTGCGGGTGACAATCCTGGTGGCTGCATCTTGGCCCATGCTCCTGGTTCTGGAAAGACATTCATGATAATCAGTTTCATGCAAAGCTTTCTTGGCAAGTATCCTAATGCCCGACCCCTAGTGGTTCTTCCTAAGGGAATATTGGCTACTTGGAAAAAGGAGTTTCAAACATGGCAAGTGGAGGACATTCCACTCTATGATTTTTACTCCGCTAAGGCAGACAGTCGGTCTCAGCAGTTGGAAGTTTTAAAAAAGTGGGTAGAGCAGAAGAGTATTCTTTTCCTAGGATATAAACAATTTTCTTCAATTGTCTGTGATACTGGAACTAGCCAGGTATCCACATCTTGCCAAGAGATATTGCTTAGGGCTCCTTCTATTCTCATCTTAGATGAGGGACACACACCCAGGAATGACAATACTGACATAGTTCAGTCCCTTACCAAAGTGCAAACACCTCGGAAAGTTGTACTGTCAGGAACCCTGTATCAAAATCATGTCAAAGAGGTGTTTAACATTTTGAACATTGTGCGTCCACCAAATTTTCTACGCTCACAAACATCTCGACCTATTGTCAGGCGCATTAAGAGTAGAGTACATGTACCTGGTGTGAAGGATTTCTGTGACTTGGTGGAGAACACATTGCAGAAGGACCCTGATTTTAAAAGGAAAGTGGCTGTCATTCAAGATTTGCGTGAGATGACAAGCCAGGTACTTCATTACTACAAGGGAGATTTTCTTGATGAGCTTCCCGGCCTTGTAGATTTCGCAGTTGTGCTCAATCTTAGTCCCCGACAGAAGCACGAAGTCCATAAACTAAAGCACTTATCCAGAAAGTTTAAGATAAGTTCTGTAGGAAGTGCGGTTTATCTTCACCCTAAATTAAAGCCTATGGCAGAAAATTGTGCTGAGAATTCTGCTGTATCTGATCACATGATGGATGAGATGATAGAGAGTCTAGATCTGGAAGATGGGGTGAAGTCAAAATTCTTTCTTAAAATGCTGAGCCTATGTGAATCAAGTGGGGAGAAGCTTCTAGTCTTTAGCCAATATCTCTTGCCTTTGAAGTATTTAGAAAGGTTAACTGTGAAACGGAAGGGATGGAGTCCTGGAAAAGAGATATTTGTCATATCAGGTGAATCCAGCTCTGAACAAAGAGAATGGTCCATGGAGCAGTTTAACAATTCACCTGATGCTAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAAGGCATATCTTTGGTTGGGGCATCACGAATAATTATTTTGGATGTTCATCTAAATCCATCAGTTACACGCCAAGCAATTGGCCGTGCATTCCGACCTGGTCAGACAAGGAAAGTCTTTGCATATCGGTTGATAGCTGCTGATTCTCCTGAACAGGAAGACCATGATACTTGTTTCAAGAAGGAATTGATATCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTTTTCATGATTTTGAAGTTGAGACTGTTGATGTGGAACAATGTGGTGATGACTTTCTGCAAACTCAATTGATAAGGGATGATATAAAAATTCTGCATAGAAGGCCTTGA 2730 0.411 MKRGRKSYKSLRSLLEQGLSYNKSAVPSTTMRYLPIGQFSGHRPINAFPLPFMESPAVGLLPAKRPADGCNSEKHKRLKVVDYSNPYAIADLLDGLNHGKFGSVTKEIESLIAQKMRTLSPIFAKDPALLQFVKVGMNRDEEAAKKIIDLEDNPMTKTASKASSTVVIIDSDEEDDRDKKPCLPFQEVILPKPAVWSTTKDIVGYHGPNAHLPPIGSHAGSLDVKPEPFLIGKDDTGKDKGAFIGVQEGDSPQADTKDDGLEDIWREMSMAIECSKDVDMDSLHDEAEKGVDDCDHSYVLKDDLGYVCRVCGVISRGIETIFEFQYKVKKSTRTYMADSRNSKERALPDVSGLKFGEDGLVISELSAHPRHMKQMKPHQIEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILATWKKEFQTWQVEDIPLYDFYSAKADSRSQQLEVLKKWVEQKSILFLGYKQFSSIVCDTGTSQVSTSCQEILLRAPSILILDEGHTPRNDNTDIVQSLTKVQTPRKVVLSGTLYQNHVKEVFNILNIVRPPNFLRSQTSRPIVRRIKSRVHVPGVKDFCDLVENTLQKDPDFKRKVAVIQDLREMTSQVLHYYKGDFLDELPGLVDFAVVLNLSPRQKHEVHKLKHLSRKFKISSVGSAVYLHPKLKPMAENCAENSAVSDHMMDEMIESLDLEDGVKSKFFLKMLSLCESSGEKLLVFSQYLLPLKYLERLTVKRKGWSPGKEIFVISGESSSEQREWSMEQFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTRKVFAYRLIAADSPEQEDHDTCFKKELISKMWFEWNEYCGFHDFEVETVDVEQCGDDFLQTQLIRDDIKILHRRP 909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1234 909 Pfam SNF2-related domain 395 660 IPR000330 GO:0005524|GO:0140658
Lele34g1234 909 SMART ultradead3 371 575 IPR014001 -
Lele34g1234 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 870 IPR027417 -
Lele34g1234 909 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 570 IPR027417 -
Lele34g1234 909 Gene3D - 639 884 IPR027417 -
Lele34g1234 909 SMART helicmild6 744 832 IPR001650 -
Lele34g1234 909 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 389 568 IPR014001 -
Lele34g1234 909 Pfam Helicase conserved C-terminal domain 721 831 IPR001650 -
Lele34g1234 909 Gene3D - 353 589 IPR038718 -
Lele34g1234 909 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 251 906 IPR044567 GO:0080188
Lele34g1234 909 CDD SF2_C_SNF 715 843 - -
Lele34g1234 909 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 718 886 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1234 Lele-ChrLele34 20477691 20484605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1234 729 850 RAD5 or RAD16-like Gene Family AT5G43530 36.885 4.37e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele34g1234 SNF2_N 8.9e-22 CL0023