Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1152 ATGATATTTTCTTGTCCACTTGAGACTTGTGCCGTAAATAGGTTGTTGAATCTAGATGATGAGAAATTGTGCCAATGTGCTGCTATATATAAGAGAATTCCAAAGACGGAAAAGAGTAGAGTGCGTGTGAATTTCTAGTCCTCCAAATTAGCATCGCAAAAAGCTCACATGCATGCTCCAGTAGATGTCATTAGTGAGGATTTTATATTTGCTTCATGGCTAACCAAAGGAAGAAGGTGCTTACTCTCTGAAGAGCTTGTTCAGCAAAAGCCCAAGGAAGAAGCCGATTACCTTCGAAAGGCTGCGAGCTATACTCAGTTTTCCATCATCTTCAACCTCCTTCTCTTTCTTCTTCTTCTTCTTCGCCACCACCTGACCCCACAATGCAAGACAGCTTTTATTTCCATATCTGAGAGGGAGAGTAAAATGCAGTGGCTAGGAGTGTTAAAGAAAGTCATCCTCAAGAATAGTAGGGGCAAGTTGTGGCATGTCAACATAAGCAACATTAATGGTGACATGTATTGTGATCATGGTTGGGAGCAGTTCACGAAGGACAATTCATTAAAGGCTGGTTGCTTCATTGTTTTTTCATTTGATGGAAGTAACACTGTCAACTTCAAAATCTACACCACAAATCGTTGTGAAATGACCGAGACCTACGAAGAGGAAGAAGATAAAGAAAATAATTCTGCAGAGGAGGAAGATGATGACGACGACCACCACGACGACAAGGATGAGGATGTGAAAGAAGAGAAGGATGAACAAGTTAACAATAGAAGGAGGAAGAGAAAACGCTTGAGTCATAGTGTCAGTCAAAGGATGTATGTTGAGCCAGATAATCCCTACTTCTTAACAAAACTAGGAGGAAACAGGAAAAATGAGCTGATTTCTATCATGAGTTATTCTCTGAATACAACTTTTGAATGCTGGTTACTATTTTGCATTGATTGGTTTATTGCAGCATATCCCAGATTACGCAACTTGCATGGCAGAGTGCCAGAGAAAGCCATCCTTGAGATTGGAGGAGGCAGATTGTGGCATATTGAAATATGTAACATTGATGATCACATGTATTTCTGCAATGGTTGGAAGCAGTTTGTAATGCATAATTCATTAGAGGTTGCGAGCTTCATTACTTTTTCATCTAATGGAAATAATACATTTAAGTTCAAAATCTTTGAATCAAATGGGCATGGAGTGATGGAAACACATGAAGAAGAATATGAAGAAATCGATCCTATAACAAAGGACGAGGAGAAAGCGGAAGACGAAGACAAAGATGATTGA 1287 0.3947 MIFSCPLETCAVNRLLNLDDEKLCQCAAIYKRIPKTEKSRVRVNFXSSKLASQKAHMHAPVDVISEDFIFASWLTKGRRCLLSEELVQQKPKEEADYLRKAASYTQFSIIFNLLLFLLLLLRHHLTPQCKTAFISISERESKMQWLGVLKKVILKNSRGKLWHVNISNINGDMYCDHGWEQFTKDNSLKAGCFIVFSFDGSNTVNFKIYTTNRCEMTETYEEEEDKENNSAEEEDDDDDHHDDKDEDVKEEKDEQVNNRRRKRKRLSHSVSQRMYVEPDNPYFLTKLGGNRKNELISIMSYSLNTTFECWLLFCIDWFIAAYPRLRNLHGRVPEKAILEIGGGRLWHIEICNIDDHMYFCNGWKQFVMHNSLEVASFITFSSNGNNTFKFKIFESNGHGVMETHEEEYEEIDPITKDEEKAEDEDKDD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1152 428 Pfam B3 DNA binding domain 150 209 IPR003340 GO:0003677
Lele34g1152 428 Pfam B3 DNA binding domain 334 395 IPR003340 GO:0003677
Lele34g1152 428 SMART B3_2 318 396 IPR003340 GO:0003677
Lele34g1152 428 SMART B3_2 116 212 IPR003340 GO:0003677
Lele34g1152 428 SUPERFAMILY DNA-binding pseudobarrel domain 134 216 IPR015300 -
Lele34g1152 428 MobiDBLite consensus disorder prediction 218 263 - -
Lele34g1152 428 MobiDBLite consensus disorder prediction 245 260 - -
Lele34g1152 428 CDD B3_DNA 150 209 IPR003340 GO:0003677
Lele34g1152 428 ProSiteProfiles B3 DNA-binding domain profile. 150 212 IPR003340 GO:0003677
Lele34g1152 428 MobiDBLite consensus disorder prediction 404 428 - -
Lele34g1152 428 CDD B3_DNA 298 393 IPR003340 GO:0003677
Lele34g1152 428 SUPERFAMILY DNA-binding pseudobarrel domain 313 397 IPR015300 -
Lele34g1152 428 ProSiteProfiles B3 DNA-binding domain profile. 343 396 IPR003340 GO:0003677
Lele34g1152 428 PANTHER B3 DOMAIN-CONTAINING 149 261 - -
Lele34g1152 428 MobiDBLite consensus disorder prediction 218 244 - -
Lele34g1152 428 Gene3D - 318 397 IPR015300 -
Lele34g1152 428 Gene3D - 122 214 IPR015300 -
Lele34g1152 428 MobiDBLite consensus disorder prediction 406 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1152 Lele-ChrLele34 20004743 20012769 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1152 307 393 REM Transcription Factor Family AT3G06220 30.337 1.06e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele34g1152 B3 5.1e-08 CL0405