Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1122 ATGGATGCTTCTAACTATTTTTCTGGCGCCGTTGAGTCTTCATCATCATCAGCCAACGATCTTAATGGCTCTAAACCACGACACCACATGAGGCCCCTCGGCCCCTTGCGAAGGACTGATCACTATGTTGCCTTGTTAAGCGCTTATGTTGCCGATGCTGCTTCCTTGCGGTCGCCGCCGGCGACTTCGGTTGAACGTTCATCCGCCGCCTCGCCTTCTTCGCCGGAGGATGATTCTAGCCCTGTGCCTGAGGATTTGACCTACGACGGATCATATCTACTCCGTTTTCTGGGCATCGAAAGCCTACCTGATTCGTCTTCAGAGGGACAAGTTACTTATAAAGCAGAAACAAAACAGAAACCAACAAGTCATCATAAGGATTCACACGGCCACCAGGAACACTTTGTATCTGAGGACGGATCAGAGATCCACAATGTTAACGTTCAGCTCCAGGATGATTCATTCAAAAACCCTGACGACAGTTCAAATCAAGGTGAAGTTGCACCTATTCACCATAATTCTTGGAGCACTGAAGATTGGAACATTATCACAGGATTCAATGACAAATACATGCAAATGCCACCTGAAGATACCTTTGCAGTTGGGCCGCGACTGCCGCCGCCGCCATTTTATTCTGTTGCTGATCAGTATTTGCTCCCAATATCACTGGGTATCCAAAGCCCACCTTCGTCTTCAGAGAGACAAGTTGCTGATAATGCAGAAGCAAACATTGGCACGTCGGCCAACCAGAAACCAATGAGTCATAAGGATTCAGACGGCCACGGGGAACAACTTGTAGCTGATGATCAAGATACACAAGAGAGTGGGGTTGAATCTGGATCAGAGATCCCCAATGTTAACGTTCAGCTCCAGGATGATTCATTCAAAAACTTTGACGACAGTTCAAATCAAGGTGAAGTTGCACCTATTCACCATAATTCTTGGAGCACTGAAGATTGGAACATTATCAAAAGATTCGATGACAAATACATGCAAATGCCACCTGAAGATACCTTTGCAGTTGGGCCGCGACTGCTGCCGCCGCCATTTTATTTTGATGCTGATCAGTATTTGCTCCCAATATCACTGGGTATCCAAAGCCCACCTTCGTCTTCAGAGAGACAAGTTGCTGATAATGCAGAAACAAACATTGGCACGTCGGCCAACCAGAAACCAATGAGTCATAAGGATTCAGGCGGCCACGGGGAACAACTTGTAGCTGATGATCAAGATACACAAGAGAGTAGGGTTGAATCTGGATCAGAGATCAACAAGGTTAATGTTCAGCTCCAGAATGATTCATTCAAAAACCCTAATAATGACAGTTCAAATCATCAAAGTGAAGTTGCACTTGCACCTATTCATTGTAATTCTTGGAGCGCTGAAGATTGGAACATTCACACAATTTTCAATAACAAATACATGGACATGCCACCTCAAGCTGCTTTTGCTGCTGGGCCGCGACTCCTGCCGCCGCCACCATTTTATTCTGATGATGCTGATCAGTATTTGCTCCCATCATCACTGTCGCCAACTTATGGAGGGTCTTTTGCCATTTTCGTCAATCTTGATGCTGGAAGAGCTGAGAAACTTAAAGACGATTCAAAGAAAACCAAAAGCAACGATGTGCTCCTTGCAAAGGCTTCAAAGAGTTCTACATTGGTGGGGAAGATGACCGTATTGGTCTTTGCAATGGTCTGCGGAGTGTATATATGTTCTATTTGTCTAAAGCAGATAAGCACGCCCACTAAGATTGGATTTTTGGATATAAAGGTCGTCAACGAGACATGCCCAGCACCCAACATTGAACCTTGGGAAATGCCTTACGTGCATTTCCCAAAACCCAAAACTTACAGCCGGGCTGAATGTGCTTGCAATCCTGTGAGGAATTTTGCCCTGTTGTCAATGCAGAGATCTGGGAGTGGATGGTTTGAGACGTTTTTAAATAATCATACTAACATAAGCTCAAATGGGGAAATTTTCTCTGTTAAAGTGAGAAGGAGTAACATCTCAACTATTGTGGAGACTCTGGATAAAGTTTATAATCTAGACTGGTTAAGTAGCGCGTCAAAAAATGAATGCACAGCTGCAGTTGGCTTAAAGTGGATGCTTAATCAGGGGTTGATGCAAAATCATGAACAAATAATTGAGTACTTCAGAAAACATGGTGTTTCAGTTATATTTCTTTTCCGAAGGAATCTCCTCCGTAGGATGATTTCTATACTTGCAAATCAATATGACAAAGATGCTAAGCTATTAAATGGGACTCACAAGTCTCATGTTCATTCACCCCGTGAGGCAGAGACACTTGCAAAATACAAGCCCATGATCCACTCAACACTGTTGATATCAGAACTGAGGAAAGTGAATGAAACCACCACCAAGGCCTTGGGATATTTCAAGAGCATCAGACATATTGTCCTATACTATGAGGATGTTGTCAAAAACCGCACTAAATTAGCAGATGTTCAAGATTTTCTCAAGGTTCCTCATGAAGATTTGAAGAGCCGTCAGGTGAAGATACATAAAGGGCTCTTATCCAATCAGATTGAGAATTGGAATGATGTCAGCAAGACACTCCATGGAACAGCATATGAGAGCTTCCTTCATTCAGATTACCGCAAGAGCCTTGCACTGTCTTTAAAAAATATGGAAAAAGAGCTAATCAAAATCAGAGGCCTGAGGCTGGGTTATGGTACAAAGGAATCAGTGTTGGAATCCAAGATTCAGTGTGTTTGGTATAAGAGTATTCAGGTCCTTTCCTTCTCTCTCAATTTCAGCTCCACAACTTCCCGAGTCGGAGAGGAAACAAAGGTACAGAGAAGCTCCATAGAAGCCATGGCTCAGCCCACCAACACGGCGGATCTGAATCAGCACCAACATCAGCAGCAGTGGACGTCGCAGCAGCCGCATCCCTACCAGCAGCAATGGATGGCTATGCAGTACCCTGCTGCTGCCATGGCCATGATGCAGCAGCAGATGATGATGTACCCGCAAAATTACATGCCTTACGTCCACCATTATGTGCCTCCTCACCAGCAGCAGCAGCAGCTCAAGCCGCTGCCGTATCAGCAGCAGCAGCAGCAGAAGCAAGGGTCCTCCGATGAGATCAGGACGATATGGCTCGGTGACCTTCATCATTGGATGGATGAGAACTACCTGCATAACTGTTTTGCTCATACAGGGGAGGTTGTCTCAGCCAAGGTTATACGAAATAAGCAAACTAGCCAGTCTGAGGGGTATGGATTTGTTGAGTTTTATTCACGTGCAACAGCGGAGAATGTTTTGAACAGCTACAATGGTACTATGATGCCAAATACCGATCAGCCCTTCCGTCTAAATTGGGCTACTTTCAGCGCTGTTGATAGGAGATCTGATGCTAGTTCTTCTGATCTGTCTATATTTGTTGGGGACCTGGCTGTAGATGTTACTGATGCTATGCTGCATGAAACCTTTGCTAGCAGATATACATCTGTAAAGGGAGCCAAAGTTGTCATTGATTCAAATACTGGCCGTTCAAAAGGTTATGGTTTTGTAAGGTTTGGTGATGAAACTGAGAGGACTAGGGCCATGACTGAAATGAATGGATGCTATTGTTCAAATCGTCCTATGCGTATAGGTGTTGCAACCCCAAAGAAGTTCCATGGGTACCAACAACAATATTCTTCCCAAGCTGTAGTATTAGCTAATGGACATTCATCTGATGGTGCTACCACACAAGGTTCCCAGCCTGAAGGGGACTCAAATAACACAACCATTTTTGTTGGGGGCCTTGATTCTGATGTTAGAGACGATGATCTTAGACAACCATTTTTGCAATTTGGTGAGGTTGTCTCGGTCAAAATACCTGTGGGTAAAGGTTGTGGTTTTGTTCAATTTTCTGACAGAAAGAATGCTGAGGAAGCACTTCAAGCATTGAACGGGACAGTAATTGGGAAGCAGACCGTACGACTTTCTTGGGGTCGCAGTCCTGGAAATAAGCATTGGAGGACTGTTTCCAATGGAGGTCACTATGGAAGCCAGGGGTCTGCGATTAGACAAAACCAAGATATCAGTATGAACATTGCTGCTGCAGTTCAAGGGGAATCCCGATAG 4095 0.4459 MDASNYFSGAVESSSSSANDLNGSKPRHHMRPLGPLRRTDHYVALLSAYVADAASLRSPPATSVERSSAASPSSPEDDSSPVPEDLTYDGSYLLRFLGIESLPDSSSEGQVTYKAETKQKPTSHHKDSHGHQEHFVSEDGSEIHNVNVQLQDDSFKNPDDSSNQGEVAPIHHNSWSTEDWNIITGFNDKYMQMPPEDTFAVGPRLPPPPFYSVADQYLLPISLGIQSPPSSSERQVADNAEANIGTSANQKPMSHKDSDGHGEQLVADDQDTQESGVESGSEIPNVNVQLQDDSFKNFDDSSNQGEVAPIHHNSWSTEDWNIIKRFDDKYMQMPPEDTFAVGPRLLPPPFYFDADQYLLPISLGIQSPPSSSERQVADNAETNIGTSANQKPMSHKDSGGHGEQLVADDQDTQESRVESGSEINKVNVQLQNDSFKNPNNDSSNHQSEVALAPIHCNSWSAEDWNIHTIFNNKYMDMPPQAAFAAGPRLLPPPPFYSDDADQYLLPSSLSPTYGGSFAIFVNLDAGRAEKLKDDSKKTKSNDVLLAKASKSSTLVGKMTVLVFAMVCGVYICSICLKQISTPTKIGFLDIKVVNETCPAPNIEPWEMPYVHFPKPKTYSRAECACNPVRNFALLSMQRSGSGWFETFLNNHTNISSNGEIFSVKVRRSNISTIVETLDKVYNLDWLSSASKNECTAAVGLKWMLNQGLMQNHEQIIEYFRKHGVSVIFLFRRNLLRRMISILANQYDKDAKLLNGTHKSHVHSPREAETLAKYKPMIHSTLLISELRKVNETTTKALGYFKSIRHIVLYYEDVVKNRTKLADVQDFLKVPHEDLKSRQVKIHKGLLSNQIENWNDVSKTLHGTAYESFLHSDYRKSLALSLKNMEKELIKIRGLRLGYGTKESVLESKIQCVWYKSIQVLSFSLNFSSTTSRVGEETKVQRSSIEAMAQPTNTADLNQHQHQQQWTSQQPHPYQQQWMAMQYPAAAMAMMQQQMMMYPQNYMPYVHHYVPPHQQQQQLKPLPYQQQQQQKQGSSDEIRTIWLGDLHHWMDENYLHNCFAHTGEVVSAKVIRNKQTSQSEGYGFVEFYSRATAENVLNSYNGTMMPNTDQPFRLNWATFSAVDRRSDASSSDLSIFVGDLAVDVTDAMLHETFASRYTSVKGAKVVIDSNTGRSKGYGFVRFGDETERTRAMTEMNGCYCSNRPMRIGVATPKKFHGYQQQYSSQAVVLANGHSSDGATTQGSQPEGDSNNTTIFVGGLDSDVRDDDLRQPFLQFGEVVSVKIPVGKGCGFVQFSDRKNAEEALQALNGTVIGKQTVRLSWGRSPGNKHWRTVSNGGHYGSQGSAIRQNQDISMNIAAAVQGESR 1364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1122 1364 MobiDBLite consensus disorder prediction 1 35 - -
Lele34g1122 1364 CDD RRM3_NGR1_NAM8_like 1250 1321 - -
Lele34g1122 1364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1134 1203 IPR000504 GO:0003723
Lele34g1122 1364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1253 1316 IPR000504 GO:0003723
Lele34g1122 1364 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1040 1107 IPR000504 GO:0003723
Lele34g1122 1364 Gene3D - 1229 1351 IPR012677 -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 1015 1034 - -
Lele34g1122 1364 Gene3D - 628 858 IPR027417 -
Lele34g1122 1364 CDD RRM1_SECp43_like 1039 1119 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 269 286 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 118 133 - -
Lele34g1122 1364 FunFam Polyadenylate-binding protein RBP47 1233 1346 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 396 418 - -
Lele34g1122 1364 FunFam Polyadenylate-binding protein RBP47B 1119 1222 - -
Lele34g1122 1364 Gene3D - 1132 1208 IPR012677 -
Lele34g1122 1364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1038 1118 IPR000504 GO:0003723
Lele34g1122 1364 MobiDBLite consensus disorder prediction 104 133 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 244 286 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 383 425 - -
Lele34g1122 1364 SMART rrm1_1 1133 1207 IPR000504 GO:0003723
Lele34g1122 1364 SMART rrm1_1 1252 1319 IPR000504 GO:0003723
Lele34g1122 1364 SMART rrm1_1 1039 1114 IPR000504 GO:0003723
Lele34g1122 1364 MobiDBLite consensus disorder prediction 254 268 - -
Lele34g1122 1364 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 538 874 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 1 23 - -
Lele34g1122 1364 CDD RRM2_SECp43_like 1131 1210 - -
Lele34g1122 1364 FunFam Polyadenylate-binding protein RBP47B 1037 1117 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 55 85 - -
Lele34g1122 1364 MobiDBLite consensus disorder prediction 60 80 - -
Lele34g1122 1364 Gene3D - 1000 1131 IPR012677 -
Lele34g1122 1364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 625 897 IPR027417 -
Lele34g1122 1364 SUPERFAMILY RNA-binding domain, RBD 1036 1213 IPR035979 GO:0003676
Lele34g1122 1364 SUPERFAMILY RNA-binding domain, RBD 1244 1343 IPR035979 GO:0003676
Lele34g1122 1364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1132 1211 IPR000504 GO:0003723
Lele34g1122 1364 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1251 1323 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1122 Lele-ChrLele34 19807203 19822720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1122 1040 1330 Eukaryotic Initiation Factors Gene Family AT4G34110 27.273 3.10e-21 98.2