Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1114 ATGATTTATATAGATTATGCTCTTGGTCGGCTGCTCAACAGTAGAGTGGAAAGTGCAAAGCTACAGCATTTAGCATTGGCCGGTGAAGCCCCCCCTCTATCCAATAGACCAATTCCTTTCAAATTAGTTATTTTGGATTTGGACAAAGATTTTGAAAATGGGCCAGACCCAAGCAAAAGAAGCCCAGTCCAAATCCAATGGCGGGAACAGGGTTGGCTGTCTATCTTTGTGAAAACCTTGACCGGCAAGACAATCACCCTCGAGGTGGAAAGCTCGGATATTATAGACAACGTGAAGGTGAAGATCCAAGATAAGGAAGGTTTCCTCCAGACCAGCAGAGGCTCATCTTTGCTAATCTTTGTCAAAACCTTGACGGGAAAGACCATCACTCTTGAGGTGGAAAGTTCTGATACGATCAATAATGTCAAAGCAAAGATCCAGGACAAGGAAGGTATCCCACCTGATCAGCAGCGTTTGATCTTCGTTGGAAAGCAATTGGAGGATGGTAGGACCCTTGCCGATTATAACATCCAGAAAGAGTCAACTCTTCATCTAGTGCTTCGTCTGCGTGGAGAAATGGTGGCTGTGAGAAACGTTGTGCTGTCGCTGCTTTGTATAACTGTTGTTGCTCCGATTGTTCTCTATACTAATCGTCTTGTCACGGTGCTGGAGACTCTGGCCATTTGA 687 0.4512 MIYIDYALGRLLNSRVESAKLQHLALAGEAPPLSNRPIPFKLVILDLDKDFENGPDPSKRSPVQIQWREQGWLSIFVKTLTGKTITLEVESSDIIDNVKVKIQDKEGFLQTSRGSSLLIFVKTLTGKTITLEVESSDTINNVKAKIQDKEGIPPDQQRLIFVGKQLEDGRTLADYNIQKESTLHLVLRLRGEMVAVRNVVLSLLCITVVAPIVLYTNRLVTVLETLAI 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1114 228 FunFam Polyubiquitin 3 117 192 - -
Lele34g1114 228 ProSiteProfiles Ubiquitin domain profile. 73 107 IPR000626 GO:0005515
Lele34g1114 228 PANTHER UBIQUITIN 75 108 - -
Lele34g1114 228 CDD Ubl_ubiquitin 119 191 - -
Lele34g1114 228 Gene3D - 71 110 - -
Lele34g1114 228 ProSiteProfiles Ubiquitin domain profile. 117 192 IPR000626 GO:0005515
Lele34g1114 228 SMART ubq_7 117 188 IPR000626 GO:0005515
Lele34g1114 228 ProSitePatterns Ubiquitin domain signature. 143 168 IPR019954 -
Lele34g1114 228 FunFam Polyubiquitin-C 73 106 - -
Lele34g1114 228 SUPERFAMILY Ubiquitin-like 115 192 IPR029071 -
Lele34g1114 228 SUPERFAMILY Ubiquitin-like 59 108 IPR029071 -
Lele34g1114 228 PRINTS Ubiquitin signature 148 168 IPR019956 -
Lele34g1114 228 PRINTS Ubiquitin signature 127 147 IPR019956 -
Lele34g1114 228 PRINTS Ubiquitin signature 169 190 IPR019956 -
Lele34g1114 228 Gene3D - 111 199 - -
Lele34g1114 228 Pfam Ubiquitin family 75 108 IPR000626 GO:0005515
Lele34g1114 228 Pfam Ubiquitin family 119 190 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1114 Lele-ChrLele34 19755380 19757815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1114 117 194 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 91.026 8.74e-46 147