Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1099 ATGGGTACCCTTAACAAATCAACAACAATGGTGTCTTCAGACTCCTTAGAACAGAAGGGAAAAAATATGGCTGAATCAACTGTCAACATGATTCACTGTCCTTTGATCCAGCAGCCTCGTAGCGCCTTGGATGGTCCAGTGGCTATTCTGTGGGATATTGAGAATTGTCGAGTTCCAAGTGATGTGCGCCCTGAAGATGTAGCTAATAATATAAGAATGGCTTTGAGGGTGCACCCAGTAATTAAAGGAGCTGTTATGATGTTTTCTGCTTATGGCGATTTCAATGCCTTCCCCAGGCGACTCAGAGAGGGCTGTCAGAGAACTGGTGTTAAACTCATTGATGTTCCTAATGGGAGAAAGGATGCTGCTGATAAGGCTATCTTGGTGGATATGTTCTTATTTGCCCTTGACAACCCTCCCCCTTCCTCCATCCTGCTGATATCTGGGGATGTTGATTTTGCTCCAGCACTTCACATTCTCGGTCAACGTGGTTATACAGTTATTCTTGTCATCCCAGCTGGCGTGGGTGTTTCATCTGCCCTAAGTAATGCTGGAAAATTTGTTTGGGACTGGCCTAGTGTGGCTCGTGGTGAAGGCTTTGTGCCTCCCTCAAAGGCTTTAGTTCCACCTCGTGTGAATCCAGCTGAGGTTGCTGGATATCTGATGGGGATCCATATCAATGACAATACTCATGGACAAAATGAAGAGGAAGCAATAGTTTACAGAGGAATGTCACAGAGCTATTATAACTCTAGGGATTTCTCAGTTGTGTCACAATCTCTATCCGAATACAACAGTAGCACATTAAATGGGGCCTCTCTTCGGACAACTTTAAGGTCACACAGCCTTCCTAATGGATTTAATGGTGCTTCAGGAGCACCTATGTCTTCAACTGACCAAAATGAATGCCCATTGTGGGTACAACCTGGGGATTTAAATGGTCTCAAGGGCCAGTTGGTAAAGTTGCTTGAACTTTCAGGAGGATGCTTGCCTCTGACTCGTGTTCCAGCTGAGTACCATAAATGTTTTGGGAGGCTCCTTTATGTATCAGAATATGGAGCAATCAAGTTAGTAAATCTGTTCAAGAAGATGGGTGACACCATGGCTGTAGAAGGGAAGGGGAACCGGAAGTTTGTGTATCTTCGGAATTGGAAAGCGAGCCCAAGTGTGCCTCCTTTGTCTCTGGCACAGAAGGATAAGAAAGGAAGGGGGGCTCAGGAAGAGAACATGGATGTTGTCACCGGTGGATGCTCTTCAGATGAGTTCTCAGATGAAGACAGAATAGTCATTGAAGAGCAGGATGAGAGAAGTGGAATAGGAAAGAGCCATCAGGGAAGAGCATCCAGATGTGAAATTGATGACAATCTTGAGCAGTTCAAGTATGAGCTACAGGAGATTCTAGTCAGCTATTCTTGCCGAATATTTCTAGGTTGTTTTGAAGCAATATACCAGCAACGGTATAAGAAACCGCTGGAATATCAGAGATTTGGTGTGGACAAGTTGGAGGATTTGCTCGAGAAAGTGAGTGATTTGGTGGAATTACACGAAGAACCAGTAAGCAACAGGAAGTTCCTGGCTGCTGTGGGTGGGTAG 1593 0.4501 MGTLNKSTTMVSSDSLEQKGKNMAESTVNMIHCPLIQQPRSALDGPVAILWDIENCRVPSDVRPEDVANNIRMALRVHPVIKGAVMMFSAYGDFNAFPRRLREGCQRTGVKLIDVPNGRKDAADKAILVDMFLFALDNPPPSSILLISGDVDFAPALHILGQRGYTVILVIPAGVGVSSALSNAGKFVWDWPSVARGEGFVPPSKALVPPRVNPAEVAGYLMGIHINDNTHGQNEEEAIVYRGMSQSYYNSRDFSVVSQSLSEYNSSTLNGASLRTTLRSHSLPNGFNGASGAPMSSTDQNECPLWVQPGDLNGLKGQLVKLLELSGGCLPLTRVPAEYHKCFGRLLYVSEYGAIKLVNLFKKMGDTMAVEGKGNRKFVYLRNWKASPSVPPLSLAQKDKKGRGAQEENMDVVTGGCSSDEFSDEDRIVIEEQDERSGIGKSHQGRASRCEIDDNLEQFKYELQEILVSYSCRIFLGCFEAIYQQRYKKPLEYQRFGVDKLEDLLEKVSDLVELHEEPVSNRKFLAAVGG 530
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1099 530 CDD LOTUS 312 381 - -
Lele34g1099 530 Pfam NYN domain 46 185 IPR021139 GO:0004540
Lele34g1099 530 ProSiteProfiles OST-type HTH domain profile. 455 529 IPR025605 -
Lele34g1099 530 CDD LOTUS 456 518 - -
Lele34g1099 530 Gene3D - 41 192 - -
Lele34g1099 530 MobiDBLite consensus disorder prediction 1 21 - -
Lele34g1099 530 ProSiteProfiles OST-type HTH domain profile. 311 383 IPR025605 -
Lele34g1099 530 CDD PIN_limkain_b1_N_like 46 172 - -
Lele34g1099 530 Gene3D - 311 380 IPR041966 -
Lele34g1099 530 Gene3D - 451 523 IPR041966 -
Lele34g1099 530 MobiDBLite consensus disorder prediction 391 410 - -
Lele34g1099 530 Pfam OST-HTH/LOTUS domain 456 518 IPR025605 -
Lele34g1099 530 Pfam OST-HTH/LOTUS domain 313 379 IPR025605 -
Lele34g1099 530 PANTHER LIMKAIN B LKAP 41 491 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele34g1099 Lele-ChrLele34 19694458 19696050 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1099 43 197 C2H2 Transcription Factor Family AT5G61190 42.581 2.88e-28 117