Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1096 ATGCCTGGAAGCTTAGAGCCGTTGGATTTGGGGATTCAGATTCCTTACCACTTCAGGTGTCCGATCTCCCTCGAGTTGATGCGTGACCCCGTCACCGTCTGCACCGGTCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCGCCACCGGCAACACCACCTGTCCCGTGACTCGGGCTCCGCTCACCGACTTCACTCTTATTCCCAACCACACTCTTCGCCGTCTTATCCAGGAATGGTGCGTCGCTAACCGGGCTTTCGGAATTGAGCGTATTCCCACGCCCAAACAACCCGCCGACCCGGCCTTAGTTCGTTCCTTGTTGAATCAAGTCTCTTCCGAGTCGTCTCAGAGTCAATCACGCCTCTCTGCCTTGCGCCGACTCAAGGGACTCGCGCGTGACTCGGACAAGAATCGTTCTCTTATTGGCTCTCACAACGTCCGCGACATCCTTCTCCATATTGTTTTCTCCGAACTCAATTCCGATTCTTCCGAGCTGAGCCACGAGTCACTAGCTCTGCTTGTGATGTTTCCGCTCGCTGAGCCGGAATGCACCACCGTCGTATCGGATCCGTATAAAATCAGGTATCTATCGCGTCTCCTGTTTCACACCTCAATGGACGTCCGAGTCAACTCGGCAGCGCTCATCGAAATCGTTGCGGCCGGAACTCGTTCGTCGGAGCTCCGATCTCACATCAGCTGTATCGACGAAATATACGAGGGGGTCATCGACATTCTGAAGAATCCAATCGCGTATCCTCGAGCTCTCAAGATCGGAATCAAGGCGCTGTTCGCTCTGTGTCTGGTGAAAGAGACGCGGGAAAAAGCGGTGGCAGCCGGAGCACCGGAGATCCTCATCGACCGACTCGCAGATTTCGAGAAATGCGACGTGGAGAGGGCCCTCGCAACGATCGAACTGCTGTGTCGAATCCCGGCGGGGTGCGAGGTGTTCGCGGGGCACGCGCTGACGGTGCCGCTGCTGGTGAAGATAATACTGAAAGTATCGGACCGGGCGACGGAGTACGCAGCGGGAGCGCTGCTGTCACTGTGCTCGGAATCGGAGCAGAGCCAGAGGGAGGCGGTGGCGGCTGGGGTGCTGACGCAGCTGCTGTTGCTGGTGCAGAGCGATTGCACGGAGAGGGCGAAGAAGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAACAGGATTCCCTCGGAAACTCGGACCATTTTGCATGCAGCGAAGTCGTCCTAGTCCCCTTGTGA 1257 0.5712 MPGSLEPLDLGIQIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGIERIPTPKQPADPALVRSLLNQVSSESSQSQSRLSALRRLKGLARDSDKNRSLIGSHNVRDILLHIVFSELNSDSSELSHESLALLVMFPLAEPECTTVVSDPYKIRYLSRLLFHTSMDVRVNSAALIEIVAAGTRSSELRSHISCIDEIYEGVIDILKNPIAYPRALKIGIKALFALCLVKETREKAVAAGAPEILIDRLADFEKCDVERALATIELLCRIPAGCEVFAGHALTVPLLVKIILKVSDRATEYAAGALLSLCSESEQSQREAVAAGVLTQLLLLVQSDCTERAKKKAQLLLKLLRDSWPQQDSLGNSDHFACSEVVLVPL 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1096 418 Gene3D - 91 407 IPR011989 -
Lele34g1096 418 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842|GO:0016567
Lele34g1096 418 Pfam U-box domain 14 85 IPR003613 GO:0004842|GO:0016567
Lele34g1096 418 SUPERFAMILY RING/U-box 12 90 - -
Lele34g1096 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Lele34g1096 418 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Lele34g1096 418 CDD RING-Ubox_PUB 18 59 IPR045210 -
Lele34g1096 418 PANTHER WDSAM1 PROTEIN 12 399 IPR045185 GO:0061630
Lele34g1096 418 SMART Ubox_2 17 80 IPR003613 GO:0004842|GO:0016567
Lele34g1096 418 SUPERFAMILY ARM repeat 104 392 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1096 Lele-ChrLele34 19671816 19673072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1096 1 415 U-box Gene Family AT3G19380 68.646 0.0 563