LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele34g1096	ATGCCTGGAAGCTTAGAGCCGTTGGATTTGGGGATTCAGATTCCTTACCACTTCAGGTGTCCGATCTCCCTCGAGTTGATGCGTGACCCCGTCACCGTCTGCACCGGTCAAACCTACGACCGAGCCAGCATCGAGTCATGGGTCGCCACCGGCAACACCACCTGTCCCGTGACTCGGGCTCCGCTCACCGACTTCACTCTTATTCCCAACCACACTCTTCGCCGTCTTATCCAGGAATGGTGCGTCGCTAACCGGGCTTTCGGAATTGAGCGTATTCCCACGCCCAAACAACCCGCCGACCCGGCCTTAGTTCGTTCCTTGTTGAATCAAGTCTCTTCCGAGTCGTCTCAGAGTCAATCACGCCTCTCTGCCTTGCGCCGACTCAAGGGACTCGCGCGTGACTCGGACAAGAATCGTTCTCTTATTGGCTCTCACAACGTCCGCGACATCCTTCTCCATATTGTTTTCTCCGAACTCAATTCCGATTCTTCCGAGCTGAGCCACGAGTCACTAGCTCTGCTTGTGATGTTTCCGCTCGCTGAGCCGGAATGCACCACCGTCGTATCGGATCCGTATAAAATCAGGTATCTATCGCGTCTCCTGTTTCACACCTCAATGGACGTCCGAGTCAACTCGGCAGCGCTCATCGAAATCGTTGCGGCCGGAACTCGTTCGTCGGAGCTCCGATCTCACATCAGCTGTATCGACGAAATATACGAGGGGGTCATCGACATTCTGAAGAATCCAATCGCGTATCCTCGAGCTCTCAAGATCGGAATCAAGGCGCTGTTCGCTCTGTGTCTGGTGAAAGAGACGCGGGAAAAAGCGGTGGCAGCCGGAGCACCGGAGATCCTCATCGACCGACTCGCAGATTTCGAGAAATGCGACGTGGAGAGGGCCCTCGCAACGATCGAACTGCTGTGTCGAATCCCGGCGGGGTGCGAGGTGTTCGCGGGGCACGCGCTGACGGTGCCGCTGCTGGTGAAGATAATACTGAAAGTATCGGACCGGGCGACGGAGTACGCAGCGGGAGCGCTGCTGTCACTGTGCTCGGAATCGGAGCAGAGCCAGAGGGAGGCGGTGGCGGCTGGGGTGCTGACGCAGCTGCTGTTGCTGGTGCAGAGCGATTGCACGGAGAGGGCGAAGAAGAAGGCGCAACTGTTGCTGAAGCTTCTTCGGGATTCGTGGCCGCAACAGGATTCCCTCGGAAACTCGGACCATTTTGCATGCAGCGAAGTCGTCCTAGTCCCCTTGTGA	1257	0.5712	MPGSLEPLDLGIQIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVATGNTTCPVTRAPLTDFTLIPNHTLRRLIQEWCVANRAFGIERIPTPKQPADPALVRSLLNQVSSESSQSQSRLSALRRLKGLARDSDKNRSLIGSHNVRDILLHIVFSELNSDSSELSHESLALLVMFPLAEPECTTVVSDPYKIRYLSRLLFHTSMDVRVNSAALIEIVAAGTRSSELRSHISCIDEIYEGVIDILKNPIAYPRALKIGIKALFALCLVKETREKAVAAGAPEILIDRLADFEKCDVERALATIELLCRIPAGCEVFAGHALTVPLLVKIILKVSDRATEYAAGALLSLCSESEQSQREAVAAGVLTQLLLLVQSDCTERAKKKAQLLLKLLRDSWPQQDSLGNSDHFACSEVVLVPL	418

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele34g1096	418	Gene3D	-	91	407	IPR011989	-
	Lele34g1096	418	ProSiteProfiles	U-box domain profile.	13	87	IPR003613	GO:0004842\|GO:0016567
	Lele34g1096	418	Pfam	U-box domain	14	85	IPR003613	GO:0004842\|GO:0016567
	Lele34g1096	418	SUPERFAMILY	RING/U-box	12	90	-	-
	Lele34g1096	418	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	13	87	IPR013083	-
	Lele34g1096	418	FunFam	RING-type E3 ubiquitin transferase	8	90	-	-
	Lele34g1096	418	CDD	RING-Ubox_PUB	18	59	IPR045210	-
	Lele34g1096	418	PANTHER	WDSAM1 PROTEIN	12	399	IPR045185	GO:0061630
	Lele34g1096	418	SMART	Ubox_2	17	80	IPR003613	GO:0004842\|GO:0016567
	Lele34g1096	418	SUPERFAMILY	ARM repeat	104	392	IPR016024	-

Showing 1 to 10 of 10 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele34g1096	Lele-ChrLele34	19671816	19673072	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele34g1096	1	415	U-box Gene Family	AT3G19380	68.646	0.0	563

Showing 1 to 1 of 1 entries