Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1091 ATGGCTCAGGTTCAGCCTCAGAAGGCAATTCCGGGGACTAACGGTGCTGCTGCGGCTGGTGGGAGCGGCCAGTTTGGGGCTTCGTCTCTTTATGTCGGAGATCTTGACCTGAATGTCACGGATTCGCAGCTATATGACCTGTTTAATCAAGTTGGTCAGGTCGTGTCTGTTAGGGTTTGTAGGGATTTGACTAGCCGGAGATCACTTGGATATGGTTATGTCAATTTCGGCAACGCACAGGATGCTGCCAGAGCAATGGATATGCTGAACTTCACTCCTCTGAATAACAAGCCCATTCGTATCATGTATTCACATCGTGATCCAAGTATTCGCAAAAGTGGGTCTGGAAATATATTTATTAAGAGTTTGGACAAGGCAATTGACCACAAAGCATTACATGATACCTTTTCTGCATTTGGGAATATCCTCTCTTGCAAGATAGCCACAGACTCATCTGGCCAATCAAAAGGCTATGGCTTTGTACAATTTGATAATGAGGAATCTGCTCAGAAGGCCATAGAGAAGCTTAATGGTATGTTGTTAAATGATAAACAAGTATATGTTGGGCCCTTCCTTCGCAAGCAAGAAAGAGACAGTGCAGTTGACAAGACAAGGTTCAACAATGTTTTTGTGAAGAGCCTATCAGAATCAACCTCTGATGAAGATTTGACGAAGATTTTTGGTGAATTTGGAACAATTACTAGTGCTGTGGTCATGAGGGATGGGGATGGTAAGTCAAAGTGCTTTGGATTTGTGAATTTTGAGAATGCTGATGCTGCTGCTAGGGCTGTTGAGGCCCTTAATGGGAAAAAAGTTGATGAAAAGGAATGGTTTGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAACTTGAATTGAAACTTCGATTTGAGCAGAGCATGAAAGAAGCAGCTGACAAATATCAAGGTGCTAATCTATATGTTAAAAATTTAGATGACACCATTAGTGATGATAAACTTAAGGAGCTGTTCTCTCCATATGGAACCATTACCTCATGCACGGTCATGAGAGATCCCAATGGAATAAGTCGAGGATCAGGGTTTGTTGCATTCTCAACTGCTGAGGAGGCATCCCGAGCACTCTTGGAGATGAATGGCAAAATGGTGGTAAGCAAACCTCTGTATGTTGCTCTCGCCCAACGAAAAGAGGATAGAAGAGCTAGATTGCAGGCTCAGTTTGCTCGAATGCGGCCTGTTCCAATGGCACCTTCTGTTGCTCCACGGATGCCAATGTACCCTCCTGGTGTTCCGGGTATGGGACAACAAATATTTTATGGTCAAGGTCCTCCTGCTATAATTCCTTCCCAGCCTGGATTTGGGTATCAACAACAGTTAGTGCCTGGTATGAGGCCTGGTGGAGCTCCTATGCCAAATTTCTTTATGCCAATGGTTCAGCAGGGACAACAGGGTCAGCGTCCTGGTGGAAGACGTGCAGGGGCAGTGCAGCAGACCCAGCAGCCTGGTCCACTTATGCAGCAGCAGATGCTTCCAAGGGGACGTGTCTACCGTTATCCTCCTGGTAGGGGCCTGCCTGATGTTCCCATGCCTGGGGTTGCTGGAGGCATGTTTTCTGTCCCATATGACATGGGTGGAATGCCGCTGCGTGAGTCAGGACTATCCCAACAAATTCCTATTGGGGCTTTGGCTTCTGCCTTGGCAAATGCCTCTCCTGAACAGCAAAGGACGATGTTGGGTGAGAATCTCTATCCTCTTGTGGAACAGTTGGAACCTGATAATGCTGCTAAAGTGACTGGCATGCTTCTGGAGATGGACCAGACCGAGGTTCTACACTTGCTCGAGTCACCAGAAGCTCTGAAAGCAAAGGTTGCTGAGGCAATGGATGTCCTGAGGAATGTTGCTCAGCAGCAGCAGGCTGGTGGTGCCGCCGATCAGCTGGCCTCATTATCACTTAATGACAACCTTGTTTCTTGA 1950 0.4662 MAQVQPQKAIPGTNGAAAAGGSGQFGASSLYVGDLDLNVTDSQLYDLFNQVGQVVSVRVCRDLTSRRSLGYGYVNFGNAQDAARAMDMLNFTPLNNKPIRIMYSHRDPSIRKSGSGNIFIKSLDKAIDHKALHDTFSAFGNILSCKIATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERDSAVDKTRFNNVFVKSLSESTSDEDLTKIFGEFGTITSAVVMRDGDGKSKCFGFVNFENADAAARAVEALNGKKVDEKEWFVGKAQKKSERELELKLRFEQSMKEAADKYQGANLYVKNLDDTISDDKLKELFSPYGTITSCTVMRDPNGISRGSGFVAFSTAEEASRALLEMNGKMVVSKPLYVALAQRKEDRRARLQAQFARMRPVPMAPSVAPRMPMYPPGVPGMGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGAPMPNFFMPMVQQGQQGQRPGGRRAGAVQQTQQPGPLMQQQMLPRGRVYRYPPGRGLPDVPMPGVAGGMFSVPYDMGGMPLRESGLSQQIPIGALASALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLVS 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1091 649 FunFam Polyadenylate-binding protein 15 116 - -
Lele34g1091 649 CDD RRM1_I_PABPs 29 108 - -
Lele34g1091 649 Gene3D - 293 395 IPR012677 -
Lele34g1091 649 Gene3D - 193 292 IPR012677 -
Lele34g1091 649 Gene3D - 118 189 IPR012677 -
Lele34g1091 649 FunFam Polyadenylate-binding protein 117 190 - -
Lele34g1091 649 FunFam Polyadenylate-binding protein 293 398 - -
Lele34g1091 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Lele34g1091 649 SMART poly_2 562 625 IPR002004 GO:0003723
Lele34g1091 649 SMART rrm1_1 311 383 IPR000504 GO:0003723
Lele34g1091 649 SMART rrm1_1 29 102 IPR000504 GO:0003723
Lele34g1091 649 SMART rrm1_1 208 280 IPR000504 GO:0003723
Lele34g1091 649 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lele34g1091 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Lele34g1091 649 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 28 623 IPR006515 GO:0003723
Lele34g1091 649 MobiDBLite consensus disorder prediction 472 493 - -
Lele34g1091 649 Gene3D - 546 629 - -
Lele34g1091 649 Gene3D - 26 117 IPR012677 -
Lele34g1091 649 SUPERFAMILY RNA-binding domain, RBD 29 197 IPR035979 GO:0003676
Lele34g1091 649 SUPERFAMILY RNA-binding domain, RBD 207 391 IPR035979 GO:0003676
Lele34g1091 649 FunFam Polyadenylate-binding protein 546 628 - -
Lele34g1091 649 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Lele34g1091 649 SUPERFAMILY PABC (PABP) domain 491 643 IPR036053 GO:0003723
Lele34g1091 649 CDD RRM4_I_PABPs 309 387 - -
Lele34g1091 649 CDD RRM2_I_PABPs 114 190 IPR045305 -
Lele34g1091 649 SMART rrm2_1 29 102 IPR003954 GO:0003676
Lele34g1091 649 SMART rrm2_1 311 383 IPR003954 GO:0003676
Lele34g1091 649 SMART rrm2_1 208 280 IPR003954 GO:0003676
Lele34g1091 649 SMART rrm2_1 117 189 IPR003954 GO:0003676
Lele34g1091 649 FunFam Polyadenylate-binding protein 197 292 - -
Lele34g1091 649 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Lele34g1091 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Lele34g1091 649 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Lele34g1091 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Lele34g1091 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Lele34g1091 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Lele34g1091 649 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Lele34g1091 649 PANTHER RNA BINDING PROTEIN 29 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1091 Lele-ChrLele34 19634990 19639224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1091 24 648 Eukaryotic Initiation Factors Gene Family AT1G49760 74.371 0.0 907