Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1064 ATGTTCAAAATGAACTGTGATTTAGGCAAGAGTTGTCAGAATGGGGAAGGTTCATGCTTTTGGCATGATGCCTTAGAGCAGGCCAATGCTATCAGCATGGAGGCTCCCTCAGATCAAATGAGTAGCAAAACTGGGGAGCTAACACACCATAATAAAAACACCTCAGACCAGGTGCATACAATTGATTTGGGAACTACACATTCTGAATTGCCAGAAAAAACTAATCAGATTGGCTCTGAGTCTTTGGATAATGAACAAAGGGTTATTGGAACTTGGGAAACCACCTTTCTTCTCGATGAAAAATCACCTTCAGATGGTGTGACTGGGAATTCTACTATTCAACTTCCTGCACAACCTCAATGTGACTTAGACAAGAGCTGTCAAACTGAAGAAGGTTCAGGTTTTCAACATAATACTTTAGAACTGGGCAATTCTATTGGCATGGGTGCTTCCTCAGAGAACTTGAGTGGCAAAACTAGAAAGTCATTGTGCCATATCCATAATACCTCAGAACAGTTGCATACACTTGATCCCAGAACTGCTCATTTTAAAATGTCTGAGAAAACTAATCAAACTGGCTCCGAATTTTTGAACAATGAACAAAGGGTCCTAGGTACTGAGGAAACCAGCTCTCTTCTTGATGAAAAACAGCTTACAGTTTCTGACAGTATGATTGGAGATTCTGTCATTCAATTGCCAACACAATCTCAGTGTGACTTAGACAATAGTTGCCAGAATGGAGGAGGTTCAAGCTTTCAACATAATACCTTAAAACAGGTTTCTGGTTCTTTATCTAATGATGAATCTCTGAACAAACGTCAGCAGGTCTCCCAAAATGATAATAATGAACCTGTGGAAAGAAGTGGTGCAAATGAACAATTAGATTCACCTTCTCAAGAAACTCCCAAGGGCATTAGTCCAAACTCTTTGCAAAGAAACTGCAAAAGGGCAACTCGTGCTTGGTTAGGTTGCAAGGATAAAAGAACTGCAACATCATTGAAGAAAAAATATATTCTAAGAAGTAGTGACAGAGTTTTGCGGTCAAGGGTGCGTGAAAAACCTAAACCACCCCAATCAAACACTAATTTGGTTAATGTGGACCATGTTAGAGAAAATAGAAGAAAAGGCAGGAAGAAGAATAAGGGTAGAGGGAGGAGAGTGACTGATGAATTTTCAAGGATTAGAGCTCGTCTAAGATATTTTTTAAGTCGAGTGAGCTATGAGCAGTACTTGATTGATGCTTATTCTGGTGAGGGCTGGAAAGGATATAGCTTGGAAAAATTAAAACCTGAGAAGGAGCTTCAACATTCGAAGTCTAAAATACTTGGTTTTAAATTGAAAATTAGGGATTTGTTTCGACATTTGGATACATTGTGTGCTGAAGGGAGGCTTCCCCAATCTTTGTTTGATTCTGAAGGAGAGATTGGCAGTGAGGATATATTTTGTGCAAAATGCAGGTCCAAAGAATTGACCACTGGTAATGATATAATACTTTGTGATGGTGCTTGTGATCGTGGATTTCACCAGTTCTGTTTGGAACCACCATTGTTATCTGAGAATATTCCACCTGATGATGAGGGTTGGCTGTGCCCGGGATGTGATTGCAAGGATGACTGTTTTGATCTCCTTAATGACTCCTTCGGAACAAGGCTCTCTATATGTGATTCCTGGGAGAGGGTTTTTCCAGAGGCAGCCGCAGCTGCTGGGAATAAAGTGGATCACAACTTGGGAGTTCGATCAGATGATTCCGAGGATGATGATTATAATCCTGATGTTGCAGATGATGAGGAGGTTGAAGGAGGCGAGTCAAGTTCTGATGAGTCTGAGAATGATTCTGCTTCTGAGAAAATGGAGGCTTCACGTAATGAGGACCTATACTTAGGCCTTCCTTCTGAAGATTCAGAGGACAACGATTATGATCCTGATGCTGTAGATCATGACAAAGTTGTAGCTGAAGAAAGTTCCAGCTCTGATTTCACATCTGATTCTGAGGACCTTGCTGATGTAGTTAAGGGTAATGCATTATCTGGACAGGATAACGGTCCTGTACCTGCATCATCTTTGCCAGAGCTAGATCCTGGTGAAGAAGATTCCACTCCTGTTTCTGGGAAAAGACATATTGAAAGGTTGGACTACAAAAAACTGTATGAAGAGACGTACCAAAATGCTCCATCTGATACTAGCGATGATGAAGATTGGACTGATAGTCCTGCTTTAAGTAGGAAAACGAAAGTCACTAACAAAGGGCCGCCATTGTCACCAAATGGGAAAACCTCAATGCTGGATCATATGCAGAAAGAAACTGAACATACTCCTAGGAGAAATACTCGTCAAACTAAAGTTGAAAATATGGACGATTCACTCAGTAAATCACTTGAAGGCTGTAAGAAGGCTGGTTCAAATGATAAAAAACGAGGATCTTCAACTTACAAAAGACTTGGTGAAGATGCAGTTAAGGCACTTCACAAAACCTTTAAAGAAAATCAGTACCCAGATCGTGCCACAAAAGAAAGCTTGGCACAAGAACTTGGACTTACTTTCACCCAGGTTAGCAAATGGTTCGAGAATACTCGTTGGAGCTTCCGGAATTCCCCACGTATGGAAGCCAGGGCAAATAAAAGTGCTTCACAGGGTGCCACTTCCAGCAGAGTGGAAAATGAGATAGCACTTGGTGATGAGAAGAGAGACTCAAAATCAGTGTCCCCGGAGGGGCATATACAGAAATCAAAATCAAAGAGGAAGCGTACTACAGATACTGAGGAATCTGATGCAAATCTAAACATTGATAGTGCGGCAACAAATCCTCTTGTTCCCTCACCTAAAAGTGAAGTGCGGAGAAATCGCAAAACGAAAACAAGGAAGAGAAAATGA 2871 0.4107 MFKMNCDLGKSCQNGEGSCFWHDALEQANAISMEAPSDQMSSKTGELTHHNKNTSDQVHTIDLGTTHSELPEKTNQIGSESLDNEQRVIGTWETTFLLDEKSPSDGVTGNSTIQLPAQPQCDLDKSCQTEEGSGFQHNTLELGNSIGMGASSENLSGKTRKSLCHIHNTSEQLHTLDPRTAHFKMSEKTNQTGSEFLNNEQRVLGTEETSSLLDEKQLTVSDSMIGDSVIQLPTQSQCDLDNSCQNGGGSSFQHNTLKQVSGSLSNDESLNKRQQVSQNDNNEPVERSGANEQLDSPSQETPKGISPNSLQRNCKRATRAWLGCKDKRTATSLKKKYILRSSDRVLRSRVREKPKPPQSNTNLVNVDHVRENRRKGRKKNKGRGRRVTDEFSRIRARLRYFLSRVSYEQYLIDAYSGEGWKGYSLEKLKPEKELQHSKSKILGFKLKIRDLFRHLDTLCAEGRLPQSLFDSEGEIGSEDIFCAKCRSKELTTGNDIILCDGACDRGFHQFCLEPPLLSENIPPDDEGWLCPGCDCKDDCFDLLNDSFGTRLSICDSWERVFPEAAAAAGNKVDHNLGVRSDDSEDDDYNPDVADDEEVEGGESSSDESENDSASEKMEASRNEDLYLGLPSEDSEDNDYDPDAVDHDKVVAEESSSSDFTSDSEDLADVVKGNALSGQDNGPVPASSLPELDPGEEDSTPVSGKRHIERLDYKKLYEETYQNAPSDTSDDEDWTDSPALSRKTKVTNKGPPLSPNGKTSMLDHMQKETEHTPRRNTRQTKVENMDDSLSKSLEGCKKAGSNDKKRGSSTYKRLGEDAVKALHKTFKENQYPDRATKESLAQELGLTFTQVSKWFENTRWSFRNSPRMEARANKSASQGATSSRVENEIALGDEKRDSKSVSPEGHIQKSKSKRKRTTDTEESDANLNIDSAATNPLVPSPKSEVRRNRKTKTRKRK 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1064 956 MobiDBLite consensus disorder prediction 887 922 - -
Lele34g1064 956 CDD PHD_PRHA_like 481 533 IPR045876 -
Lele34g1064 956 MobiDBLite consensus disorder prediction 261 312 - -
Lele34g1064 956 Pfam Homeodomain 813 859 IPR001356 GO:0003677
Lele34g1064 956 CDD homeodomain 812 864 IPR001356 GO:0003677
Lele34g1064 956 MobiDBLite consensus disorder prediction 859 956 - -
Lele34g1064 956 FunFam Homeobox protein HAT3.1 462 538 - -
Lele34g1064 956 Gene3D - 806 877 - -
Lele34g1064 956 MobiDBLite consensus disorder prediction 572 812 - -
Lele34g1064 956 MobiDBLite consensus disorder prediction 739 761 - -
Lele34g1064 956 Pfam PHD-finger 481 536 IPR019787 -
Lele34g1064 956 SUPERFAMILY Homeodomain-like 805 866 IPR009057 -
Lele34g1064 956 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 269 954 - -
Lele34g1064 956 ProSitePatterns Zinc finger PHD-type signature. 482 533 IPR019786 -
Lele34g1064 956 ProSiteProfiles Zinc finger PHD-type profile. 479 536 IPR019787 -
Lele34g1064 956 MobiDBLite consensus disorder prediction 859 884 - -
Lele34g1064 956 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 475 538 IPR013083 -
Lele34g1064 956 MobiDBLite consensus disorder prediction 344 386 - -
Lele34g1064 956 ProSiteProfiles 'Homeobox' domain profile. 804 864 IPR001356 GO:0003677
Lele34g1064 956 SUPERFAMILY FYVE/PHD zinc finger 471 539 IPR011011 -
Lele34g1064 956 MobiDBLite consensus disorder prediction 697 716 - -
Lele34g1064 956 SMART PHD_3 481 534 IPR001965 -
Lele34g1064 956 SMART HOX_1 806 868 IPR001356 GO:0003677
Lele34g1064 956 MobiDBLite consensus disorder prediction 923 937 - -
Lele34g1064 956 MobiDBLite consensus disorder prediction 762 812 - -
Lele34g1064 956 MobiDBLite consensus disorder prediction 39 58 - -
Lele34g1064 956 MobiDBLite consensus disorder prediction 584 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1064 Lele-ChrLele34 19480319 19485001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1064 327 865 Homeobox Transcription Factor Family AT3G19510 44.677 5.57e-135 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Lele34g1064 PHD 1e-10 CL0390