Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1049 ATGGCTTTAGAGGCTCTGAATTCTCCCACTACTGCCCCAGCTTCTTTCACCTTCAAGCATGAGGAAGAAGACGATGAGCTTGATCTTCACTGGACTAAGGGCAAGCGTTCCAAACGTCCTCGTTTCGACGCCAACAACCCTCCTTCTGAGGAAGAGTACCTCGCTCTCTGTCTCATCATGCTCGCTCAAAGCGGCCACAACAACAACAACAACAACGCCGCTTCCTCCGCCGCCGCCTCTCCGCCGCTTCCTTTGTCTTCATCGTTGCCTCCTAATAATCCTGTGAAGCTGTCTCATAGGTGTACCGTCTGTAATAAAGTTTTCTCTTCTTACCAAGCACTCGGTGGCCACAAGGCCAGCCACCGTAAGTCCTCCTCCGAAGCCGCCGCCGCCGACAACACCGCCTCCACTTCCTCTGCTGCCGGCACGGGAAGGATGCACCAGTGTTCCATCTGTCACAAGGTCTTCCCTACCGGTCAGGCCTTGGGTGGACACAAGAGATGTCACTACGACGGCGGTAACGCGAACAGCAGTAGCGCCGGCGCCGGCTTGTCCTCATCGGAGGGAGGTGGCGTGTCTACTGTAAGCCTCCGTGGGTTCGACTTAAACCTGCCGGCACCGCTGATGGACTTATCCCCGGCAGGATTTGGCTCCAGCTCCTACTCCGGGATGAAGAAGATCGGCGTAGAGCAAGAGGTGGAAAGTCCGTTACCGGTAGGAGCCGGTAATAAGAGAAGCCGTGTGCTTTTGACCGGCGAAGAAGACGATGTAAAGTCTTCGTCGTTACGGAATTAA 795 0.5547 MALEALNSPTTAPASFTFKHEEEDDELDLHWTKGKRSKRPRFDANNPPSEEEYLALCLIMLAQSGHNNNNNNAASSAAASPPLPLSSSLPPNNPVKLSHRCTVCNKVFSSYQALGGHKASHRKSSSEAAAADNTASTSSAAGTGRMHQCSICHKVFPTGQALGGHKRCHYDGGNANSSSAGAGLSSSEGGGVSTVSLRGFDLNLPAPLMDLSPAGFGSSSYSGMKKIGVEQEVESPLPVGAGNKRSRVLLTGEEDDVKSSSLRN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1049 264 Gene3D Classic Zinc Finger 97 169 - -
Lele34g1049 264 MobiDBLite consensus disorder prediction 17 46 - -
Lele34g1049 264 MobiDBLite consensus disorder prediction 233 264 - -
Lele34g1049 264 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 36 206 IPR044653 GO:0003700
Lele34g1049 264 MobiDBLite consensus disorder prediction 248 264 - -
Lele34g1049 264 SMART c2h2final6 147 169 IPR013087 -
Lele34g1049 264 SMART c2h2final6 99 121 IPR013087 -
Lele34g1049 264 MobiDBLite consensus disorder prediction 71 91 - -
Lele34g1049 264 MobiDBLite consensus disorder prediction 126 141 - -
Lele34g1049 264 MobiDBLite consensus disorder prediction 1 47 - -
Lele34g1049 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Lele34g1049 264 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lele34g1049 264 Pfam C2H2-type zinc finger 147 171 - -
Lele34g1049 264 Pfam C2H2-type zinc finger 99 123 - -
Lele34g1049 264 SUPERFAMILY beta-beta-alpha zinc fingers 99 169 IPR036236 -
Lele34g1049 264 MobiDBLite consensus disorder prediction 119 141 - -
Lele34g1049 264 ProSitePatterns Zinc finger C2H2 type domain signature. 149 169 IPR013087 -
Lele34g1049 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 147 169 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1049 Lele-ChrLele34 19385474 19386268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1049 1 238 C2H2 Transcription Factor Family AT1G27730 42.231 1.24e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele34g1049 zf-C2H2_6 1.1e-11 CL0361