Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1028 ATGTCGACTTCAAGGAGGAGCAAGGGTCGCCAGAAGATTGATATGAAGAAGATGACCAACGAGAGCAACTTGCAGGTAACTTTCTCGAAGCGTCGCACTGGGCTTTTCAAGAAAGCTAGTGAGCTTTGTACTCTTTGTGGTGTTGAGGTTGCTCTCATCGTCTTCTCCCCCGGCGAGAAGGTCTTCTCCTTCGGCCAACCCAGCGTCGACACCGTGGTGGATAGCTACCTCACGCGAGCCCCACCACCACAGGCCTCCGGCACCATGCAGCTCATCGAGGCCCACCGCAGCGCCAACGTTCGAGACCTCATCGGCCAGTTCACTCAAATCTCTGCCCAGCTCGACATCGAGAAGAAGCGCAATGATGAACTGAATCACATGCGAAAGGCCACTCAAGGTCAGTGCTGGTGGGCAGCTCCGATTGATGAGATGTCAAGGTCAGAGCTTGAGGAGTTCAAGGCGGCGTTGGAGGAGCTAAAGAGGAGTGTGACGAGGCAGGCTGATAGGATGGTGCTGATTCAGGGTGCAAGTAACTCATCGAATCAGTTTTTGGTCGGAGGTCCGTCTTCGAATGCGGTAGCTCCACCGCCACCGCCACCTCCACTGCCTCATCAGGTGTTTCAGTCGCCGCCGTCGGTGGGAGTGGGTCAAAATCCTGCTGTGTTTGATGGCAATATTGTGCCATCACACTATGGATTTGGAGGACCACCACCACCACCACCAGGGTTTTACTGA 735 0.5483 MSTSRRSKGRQKIDMKKMTNESNLQVTFSKRRTGLFKKASELCTLCGVEVALIVFSPGEKVFSFGQPSVDTVVDSYLTRAPPPQASGTMQLIEAHRSANVRDLIGQFTQISAQLDIEKKRNDELNHMRKATQGQCWWAAPIDEMSRSELEEFKAALEELKRSVTRQADRMVLIQGASNSSNQFLVGGPSSNAVAPPPPPPPLPHQVFQSPPSVGVGQNPAVFDGNIVPSHYGFGGPPPPPPGFY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1028 244 CDD MADS_MEF2_like 9 78 IPR033896 GO:0000977|GO:0045944
Lele34g1028 244 MobiDBLite consensus disorder prediction 182 221 - -
Lele34g1028 244 PANTHER MADS BOX PROTEIN 10 166 - -
Lele34g1028 244 ProSiteProfiles MADS-box domain profile. 8 68 IPR002100 GO:0003677|GO:0046983
Lele34g1028 244 FunFam Agamous-like MADS-box protein AGL62 20 86 - -
Lele34g1028 244 MobiDBLite consensus disorder prediction 191 207 - -
Lele34g1028 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 17 64 IPR002100 GO:0003677|GO:0046983
Lele34g1028 244 Coils Coil 149 169 - -
Lele34g1028 244 SUPERFAMILY SRF-like 9 91 IPR036879 GO:0003677|GO:0046983
Lele34g1028 244 Gene3D - 88 183 - -
Lele34g1028 244 PRINTS MADS domain signature 10 30 IPR002100 GO:0003677|GO:0046983
Lele34g1028 244 PRINTS MADS domain signature 30 45 IPR002100 GO:0003677|GO:0046983
Lele34g1028 244 PRINTS MADS domain signature 45 66 IPR002100 GO:0003677|GO:0046983
Lele34g1028 244 SMART madsneu2 8 67 IPR002100 GO:0003677|GO:0046983
Lele34g1028 244 Gene3D - 20 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1028 Lele-ChrLele34 19206255 19207093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1028 5 192 Type I MADS-box Gene Family AT5G60440 54.737 1.68e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele34g1028 SRF-TF 7.7e-25 No_clan