Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g1026 ATGGATCTCATAACCAAGAAAACCACAAGCACAGGCCGCAAGAAGATCGAGGTAAAGGAGATAGAGAAGGATTCCAACAAACAAGTCACCTTCTCGAAACGACGCACCGGACTGTTCAAGAAAGCCAGCGAGCTCTGCGTATTGTGCAATGCTCAGATCGCCATCATCGTGTTCTCGCCGGCCGACAAAGCCTTTTGCTTCGGCCAACCCAACGTCGAAGCCGTCCTCCGCCGCTACAAACCCGAAGGAACAGAAGATCATCACGACGAACAACCTATCAGGGCGCCGGAGAGCGACATCGGTCTGGTGTCCTACGAAGAACTTAACAGACAACATGAGGAAGCAGTGAAGGCATTGGAGATGGAGAAGCAACAATTGGAGGAGATAAAAAATGTGGCTAAGGTATGGAATAGAGGAAACTGGTGGGACGAACCGATTGATGAGATGGATTTGGATCAGTTAGAGCAATATGTGATGGCCATGCATGAGTTAAGAAGAAAGGTGGCTGAGAAGGCTGATGAGTTAATGAGGGTTTCGATAATGCCGCCGTCGGCGCCGTCGTTTTATGGTGAAAGTTCATTTGATGGTCTTCTTAGCGGAGATGGCGGCGGCGGCTATGGTGGTTTTGCTAACCAGTTCGTTGGCAGCAGTCTTGTTGCTTATCATGACAAGTTTGAATTTTGA 684 0.4898 MDLITKKTTSTGRKKIEVKEIEKDSNKQVTFSKRRTGLFKKASELCVLCNAQIAIIVFSPADKAFCFGQPNVEAVLRRYKPEGTEDHHDEQPIRAPESDIGLVSYEELNRQHEEAVKALEMEKQQLEEIKNVAKVWNRGNWWDEPIDEMDLDQLEQYVMAMHELRRKVAEKADELMRVSIMPPSAPSFYGESSFDGLLSGDGGGGYGGFANQFVGSSLVAYHDKFEF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g1026 227 FunFam Agamous-like MADS-box protein AGL62 23 89 - -
Lele34g1026 227 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Lele34g1026 227 Coils Coil 102 132 - -
Lele34g1026 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Lele34g1026 227 Coils Coil 154 174 - -
Lele34g1026 227 SUPERFAMILY SRF-like 12 82 IPR036879 GO:0003677|GO:0046983
Lele34g1026 227 CDD MADS_MEF2_like 12 80 IPR033896 GO:0000977|GO:0045944
Lele34g1026 227 PANTHER MADS BOX PROTEIN 13 170 - -
Lele34g1026 227 Gene3D - 24 92 IPR036879 GO:0003677|GO:0046983
Lele34g1026 227 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Lele34g1026 227 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Lele34g1026 227 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Lele34g1026 227 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g1026 Lele-ChrLele34 19197814 19198497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g1026 10 203 Type I MADS-box Gene Family AT5G60440 38.776 1.57e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele34g1026 SRF-TF 1.4e-23 No_clan