Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0999 ATGGTGTGGTCACTCCGTCATAACGATCACTTTTATTTTCGCGTTCCAGAGAAAACCCTAGCAAATCAAAACTCTCCAAAGATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTCGAAGTCGAGAGTTCAGATACCATAGACAATGTCAAGGCAAAGATTCAAGATAAGGAAGGGATCCCACCGGACCAGCAGCGACTGATTTTTGCGGGTAAGCAGCTTGAGGACGGACGTACCCTTGCCGACTATAACATCCAAAAGGAATCGACTCTCCACCTCGTGCTCCGTTTACGTGGTGGTATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATCGACAATGTCAAGTCTAAGATTCAAGACAAGGAGGGCATCCCACCAGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAACTTGAGGATGGTCGTACCTTGGCTGACTACAACATCCAAAAGGAATCCACCCTCCACCTTGTCCTCCGACTCCGTGGAGGCATGCAAATCTTTGTTAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAGAGCTCCGACACCATCGACAACGTGAAGGCCAAGATCCAAGATAAGGAAGGCATTCCTCCAGACCAGCAAAGGCTAATCTTTGCCGGAAAACAGCTTGAGGATGGCCGTACCCTGGCAGATTATAACATCCAGAAAGAGTCCACCCTCCACCTGGTGCTTCGTCTCCGTGGAGGAATGCAAATTTTTGTTAAGACTCTGACAGGGAAGACCATTACCTTAGAGGTGGAAAGTTCTGACACTATTGATAACGTCAAGGCAAAGATCCAGGATAAAGAGGGAATCCCACCAGACCAACAAAGGCTTATCTTCGCTGGCAAACAGCTTGAGGATGGCCGAACCTTGGCTGACTACAATATTCAGAAGGAGTCTACTCTTCATCTTGTTCTGCGTCTTCGTGGTGGTATGCAGATTTTTGTGAAAACCCTTACTGGCAAGACCATTACCTTGGAGGTTGAGAGCTCTGACACAATTGACAATGTGAAGGCTAAGATCCAAGATAAGGAAGGAATCCCCCCTGACCAGCAGAGGTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGGCTGACTATAATATTCAGAAAGAGTCCACACTTCACCTTGTGCTTCGTCTCAGGGGAGGTATGCAGATCTTTGTGAAGACCTTGACAGGCAAAACCATCACCCTGGAGGTTGAGAGTTCGGATACCATTGACAATGTGAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCGGACCAGCAAAGATTGATCTTTGCAGGGAAGCAGTTGGAGGATGGAAGAACCCTTGCTGACTATAACATCCAGAAGGAGTCCACCCTTCACCTTGTCCTCCGTCTTCGTGGAGGATTCTAA 1455 0.4873 MVWSLRHNDHFYFRVPEKTLANQNSPKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0999 484 SMART ubq_7 332 403 IPR000626 GO:0005515
Lele34g0999 484 SMART ubq_7 28 99 IPR000626 GO:0005515
Lele34g0999 484 SMART ubq_7 408 479 IPR000626 GO:0005515
Lele34g0999 484 SMART ubq_7 104 175 IPR000626 GO:0005515
Lele34g0999 484 SMART ubq_7 180 251 IPR000626 GO:0005515
Lele34g0999 484 SMART ubq_7 256 327 IPR000626 GO:0005515
Lele34g0999 484 CDD Ubl_ubiquitin 332 407 - -
Lele34g0999 484 FunFam Polyubiquitin 3 28 103 - -
Lele34g0999 484 CDD Ubl_ubiquitin 180 255 - -
Lele34g0999 484 ProSitePatterns Ubiquitin domain signature. 358 383 IPR019954 -
Lele34g0999 484 CDD Ubl_ubiquitin 28 103 - -
Lele34g0999 484 ProSitePatterns Ubiquitin domain signature. 206 231 IPR019954 -
Lele34g0999 484 FunFam Polyubiquitin 3 408 483 - -
Lele34g0999 484 FunFam Polyubiquitin 3 104 179 - -
Lele34g0999 484 SUPERFAMILY Ubiquitin-like 331 407 IPR029071 -
Lele34g0999 484 CDD Ubl_ubiquitin 408 483 - -
Lele34g0999 484 FunFam Polyubiquitin 3 180 255 - -
Lele34g0999 484 FunFam Polyubiquitin 3 256 331 - -
Lele34g0999 484 ProSitePatterns Ubiquitin domain signature. 434 459 IPR019954 -
Lele34g0999 484 ProSiteProfiles Ubiquitin domain profile. 256 331 IPR000626 GO:0005515
Lele34g0999 484 ProSitePatterns Ubiquitin domain signature. 54 79 IPR019954 -
Lele34g0999 484 Gene3D - 21 103 - -
Lele34g0999 484 Gene3D - 104 179 - -
Lele34g0999 484 Gene3D - 180 256 - -
Lele34g0999 484 Gene3D - 408 484 - -
Lele34g0999 484 Gene3D - 332 407 - -
Lele34g0999 484 Gene3D - 257 331 - -
Lele34g0999 484 ProSiteProfiles Ubiquitin domain profile. 332 407 IPR000626 GO:0005515
Lele34g0999 484 CDD Ubl_ubiquitin 256 331 - -
Lele34g0999 484 ProSiteProfiles Ubiquitin domain profile. 408 483 IPR000626 GO:0005515
Lele34g0999 484 PRINTS Ubiquitin signature 80 101 IPR019956 -
Lele34g0999 484 PRINTS Ubiquitin signature 59 79 IPR019956 -
Lele34g0999 484 PRINTS Ubiquitin signature 38 58 IPR019956 -
Lele34g0999 484 ProSiteProfiles Ubiquitin domain profile. 28 103 IPR000626 GO:0005515
Lele34g0999 484 SUPERFAMILY Ubiquitin-like 103 179 IPR029071 -
Lele34g0999 484 ProSiteProfiles Ubiquitin domain profile. 104 179 IPR000626 GO:0005515
Lele34g0999 484 CDD Ubl_ubiquitin 104 179 - -
Lele34g0999 484 SUPERFAMILY Ubiquitin-like 179 255 IPR029071 -
Lele34g0999 484 ProSitePatterns Ubiquitin domain signature. 282 307 IPR019954 -
Lele34g0999 484 ProSiteProfiles Ubiquitin domain profile. 180 255 IPR000626 GO:0005515
Lele34g0999 484 SUPERFAMILY Ubiquitin-like 255 331 IPR029071 -
Lele34g0999 484 FunFam Polyubiquitin 3 332 407 - -
Lele34g0999 484 PANTHER UBIQUITIN 104 183 - -
Lele34g0999 484 Pfam Ubiquitin family 334 405 IPR000626 GO:0005515
Lele34g0999 484 Pfam Ubiquitin family 182 253 IPR000626 GO:0005515
Lele34g0999 484 Pfam Ubiquitin family 30 101 IPR000626 GO:0005515
Lele34g0999 484 Pfam Ubiquitin family 410 481 IPR000626 GO:0005515
Lele34g0999 484 Pfam Ubiquitin family 106 177 IPR000626 GO:0005515
Lele34g0999 484 Pfam Ubiquitin family 258 329 IPR000626 GO:0005515
Lele34g0999 484 ProSitePatterns Ubiquitin domain signature. 130 155 IPR019954 -
Lele34g0999 484 SUPERFAMILY Ubiquitin-like 21 103 IPR029071 -
Lele34g0999 484 SUPERFAMILY Ubiquitin-like 407 483 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0999 Lele-ChrLele34 19055056 19057305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0999 408 484 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.36e-46 156