Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0968 ATGCAGCCTGGTCCTGGCATGGCTCCCCCAACCATGGGCCAACAGCCTCCCCAGCAGTACCCGCAGCAGCAACATCCCTACATGATGATGCCACCGCAGGCTCAGGCGCCGCCGATGTGGGCACCCTCTGTTCAACCACCGCCACAGTCAGTCGCTCCACCGCCGCCGACTCAAGCCGCCCAGCCTGCCACCGCCGACGAGGTCCGTACTCTTTGGATCGGTGATTTGCAATTCTGGATGGACGAGAACTATTTGTACTCTTGTTTTGCTCATACAGGCGAGGTGGCCTCGGTGAAAGTTATTCGAAACAAGCAAACTAATCAGTCTGAAGGTTATGGCTTTATTGAGTTTTTCACACGTGCAGCCGCTGAGAGAATACTTCAAGCATTTAATGGAACCATTATGCCAAATGGTGGGCAAGCCTTCAGATTGAACTGGGCAACTCTTGGTTCTGGTGAGAAGCGGCACGATGATACTCCAGATTACACAATATTCGTTGGAGATTTAGCTGCAGATGTTACAGATTACGTACTGCAGGAGACGTTTCGGGCTAGGTATCCCTCAGTTAAAGGTGCAAAAATTGTGATCGATAGACTCACTGGGAGGACAAAGGGTTATGGTTTCGTTAGGTTTGGAGATGAAAATGAACAGATGCGAGCTATGACTGAGATGCAAGGTGTTGTATGTTCAACGAGACCCATGCGGATTGGACCAGCAACTAACAAAAACCCTGGCACTCAGCCAAAAGCTTCATATCAGAATCCTCTGGGGGCACAGAACGAGAATGATCCAAATAATTCAACTATTTTTGTTGGGAATTTGGATCCTAATGTAACGGATGATCATCTTAGGCAAGTTTTTGGCCAATATGGTGAGTTAGTACACGTTAAGATTCCAGCAGGCAAGCGTTGTGGGTTTGTTCAATTTGCCGACAGGAGCTGCGCTGAAGAGGCCCTGAGGGTGTTAAATGGAACACCTTTGGGTGGACAGAATGTTCGTCTCTCTTGGGGCCGGAGTCCTTCAAATAAGCAGACTCAGGCAGATCCAAACCAGTGGCATGGTGGTGCTGGTTATTACGGATATGCTCAGGGGTATGAGAACTATGGATATGCTCCAGCTGCTGCACAGGATCCCAACATGTATGGAAGCTATCCTGGCTACACCAATTACCAACCACCACAGCAACAGCAGCATAACGAACCGACTCATCTCTCTCCTCTTTCCTTTGTTATTGGAATTAATATGCGATCTTTAGTTTTTCAAAATGGTCTTCATTTGCACAATCCTCATGTCACCTTCTTCCTGAGTGTTTATCAGAAGAATATGGCCATTTTACTGAAGAAGCCATTGGCTTATTATAAGATGGAGAAGGAAGACCCAGAAGAGAGAAACCACAGAAGAGCACAGTTCTTGATCTACAAAGTGTTGGAGAAAGCAGATTTTCAGAGAAAGACTTGGTCATGTTTTGGTGTCAGAATCTCAAAGATCAAAGTGAAGATCGGGGGGAGAATGAAGAGGATGAGGAAGAGAATTGTGCGTCACTTGAAATCATGGAAACGATTGTTTGCTGGAAGACGAAGACAAGCCTGGGCTTTACGCCTTCCTCCTCTGATCAACTGA 1620 0.4716 MQPGPGMAPPTMGQQPPQQYPQQQHPYMMMPPQAQAPPMWAPSVQPPPQSVAPPPPTQAAQPATADEVRTLWIGDLQFWMDENYLYSCFAHTGEVASVKVIRNKQTNQSEGYGFIEFFTRAAAERILQAFNGTIMPNGGQAFRLNWATLGSGEKRHDDTPDYTIFVGDLAADVTDYVLQETFRARYPSVKGAKIVIDRLTGRTKGYGFVRFGDENEQMRAMTEMQGVVCSTRPMRIGPATNKNPGTQPKASYQNPLGAQNENDPNNSTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTPLGGQNVRLSWGRSPSNKQTQADPNQWHGGAGYYGYAQGYENYGYAPAAAQDPNMYGSYPGYTNYQPPQQQQHNEPTHLSPLSFVIGINMRSLVFQNGLHLHNPHVTFFLSVYQKNMAILLKKPLAYYKMEKEDPEERNHRRAQFLIYKVLEKADFQRKTWSCFGVRISKIKVKIGGRMKRMRKRIVRHLKSWKRLFAGRRRQAWALRLPPLIN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0968 539 Gene3D - 8 156 IPR012677 -
Lele34g0968 539 Gene3D - 245 348 IPR012677 -
Lele34g0968 539 MobiDBLite consensus disorder prediction 237 266 - -
Lele34g0968 539 MobiDBLite consensus disorder prediction 1 64 - -
Lele34g0968 539 FunFam Polyadenylate-binding protein RBP45C 154 245 - -
Lele34g0968 539 Gene3D - 161 237 IPR012677 -
Lele34g0968 539 CDD RRM1_SECp43_like 70 148 - -
Lele34g0968 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 149 IPR000504 GO:0003723
Lele34g0968 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 241 IPR000504 GO:0003723
Lele34g0968 539 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 267 339 IPR000504 GO:0003723
Lele34g0968 539 SUPERFAMILY RNA-binding domain, RBD 157 254 IPR035979 GO:0003676
Lele34g0968 539 CDD RRM3_NGR1_NAM8_like 266 337 - -
Lele34g0968 539 FunFam Polyadenylate-binding protein RBP45C 246 372 - -
Lele34g0968 539 MobiDBLite consensus disorder prediction 31 60 - -
Lele34g0968 539 SUPERFAMILY RNA-binding domain, RBD 50 148 IPR035979 GO:0003676
Lele34g0968 539 CDD RRM2_SECp43_like 161 240 - -
Lele34g0968 539 SMART rrm1_1 268 335 IPR000504 GO:0003723
Lele34g0968 539 SMART rrm1_1 70 145 IPR000504 GO:0003723
Lele34g0968 539 SMART rrm1_1 163 237 IPR000504 GO:0003723
Lele34g0968 539 MobiDBLite consensus disorder prediction 1 16 - -
Lele34g0968 539 FunFam Polyadenylate-binding protein RBP45 9 153 - -
Lele34g0968 539 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 60 343 - -
Lele34g0968 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 228 IPR000504 GO:0003723
Lele34g0968 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 136 IPR000504 GO:0003723
Lele34g0968 539 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 269 332 IPR000504 GO:0003723
Lele34g0968 539 SUPERFAMILY RNA-binding domain, RBD 253 364 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0968 Lele-ChrLele34 18884507 18891334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0968 266 347 Eukaryotic Initiation Factors Gene Family AT4G34110 35.955 1.34e-07 52.4