Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0943 ATGGCCACCTTCACCCCACTATGCTTCTTCCTTTCAGCAATATCTTTCCTTCCACTTATAGCTTCAAGTTCATCATATGCCTACACTACTCCCAAAACTCCTCTGAACCTCATCCGCAACACCATAGACTCTTGCTGGAGATTCAACTCAAACTGGGCATCAAATCGCCAAGCCCTAGCCGATTGTGCTGTTGGGTTTGGAAAACATGCCATTGGAGGAAAGCGTGGAGCTATATATGAGGTCACCGATGCCTCCGATGACCCTGTGAACCCTAAACCAGGCACACTTCGTTATGGTGTGATCCAAACACAGCCTCTTTGGTTAATATTCGCCGAGGACATGGTTATTAGACTCAACAACGAGCTTATAGTGAATAGCTATAAGACCATTGATGGAAGAGGAGCCAAAGTAGAGATTGCTTATGGACCTTGCATTACCATTCAAGGCGTTAATCACGTCATTATACATGGGATTAGCATCCACGATTGCAAACCAGGAAAAGCTGAGAGGGTGAGAAGCAGTAGTGATCATGTAGGACATCGTCTAGGCTCAGATGGAGACGCCATTAGCATATTTGGTTCCTCAAATGTTTGGGTTGACCATTGCTTCCTTGCTCGGTGTGCCGACGGTCTCATCGATATTATTCACGCTTCAACTTCCATCACCATTTCTAACAACTACTTCACACAACACGACAAAGTGATGCTGCTAGGACACAGCGATAAATACCAAGCAGATAAGATAATGAAAGTGACAATAGCTTTCAACCATTTTGCTACCGGCCTCTATGAAAGGATGCCAAGGGTAAGATTTGGGTACGCGCATGTGGTCAACAACAGATACGATGGTTGGAAGATGTATGCAATTGGTGGCAGTGCTGAGCCAACCATTCTGAGTGAAGGGAACTACTATATAGCTCCAAGTAACCCCAGTGGGAAACAGGTGACCAAAAGGATAGTGAAGAAAGAGTGGAAGAATTGGAAATGGAGGACTTATAAGGATGCATTTGTGAATGGAGCCTATTTTGTTCCATCTGGGTATGGAAGTTGTGCCCCTTACTATTCAAGTGCTCAGTCTTTTGTTGCTGCTTCCGCATCCTTGGTGCCTGCATTAACCCTTCATGCTGGTCCTCTCACTTGTATTGTTGGGAAAGTTTGTTAA 1161 0.4488 MATFTPLCFFLSAISFLPLIASSSSYAYTTPKTPLNLIRNTIDSCWRFNSNWASNRQALADCAVGFGKHAIGGKRGAIYEVTDASDDPVNPKPGTLRYGVIQTQPLWLIFAEDMVIRLNNELIVNSYKTIDGRGAKVEIAYGPCITIQGVNHVIIHGISIHDCKPGKAERVRSSSDHVGHRLGSDGDAISIFGSSNVWVDHCFLARCADGLIDIIHASTSITISNNYFTQHDKVMLLGHSDKYQADKIMKVTIAFNHFATGLYERMPRVRFGYAHVVNNRYDGWKMYAIGGSAEPTILSEGNYYIAPSNPSGKQVTKRIVKKEWKNWKWRTYKDAFVNGAYFVPSGYGSCAPYYSSAQSFVAASASLVPALTLHAGPLTCIVGKVC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 327 351 IPR018082 -
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 62 79 IPR018082 -
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 357 380 IPR018082 -
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Lele34g0943 386 PRINTS Pollen allergen Amb family signature 85 110 IPR018082 -
Lele34g0943 386 PANTHER PECTATE LYASE 18-RELATED 36 384 IPR045032 GO:0030570
Lele34g0943 386 SUPERFAMILY Pectin lyase-like 40 377 IPR011050 -
Lele34g0943 386 Gene3D - 39 379 IPR012334 -
Lele34g0943 386 SMART amb_all 113 310 IPR002022 -
Lele34g0943 386 Pfam Pectate lyase 122 304 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0943 Lele-ChrLele34 18691660 18693172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0943 9 386 Polysaccharide Lyase AT1G11920 69.351 0.0 546