Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0942 ATGGCCACCTTCACCTCAAGAATCCTGCTCCTTTCATGCCTTCTTCTTCCATACTTGACCACAACCTTGTACGCAGATTCAACAGACAATTACCTCGGTACTCCTGAGCTCATCAATTCAAGCTTTATTCCCGAAATTCCTAAGAACCTTATCCTCAACACCATATATTCTTGTTGGAGAGCCAACTCAAACTGGGCATCATACCGCCAAGCCCTAGCTGATTGTGCTGTTGGGTTTGGCAAAGATGCCATTGGAGGTAAGTTTGGGGCTATATATAAGGTCACTGATGCCTCCGATGACCCTGTGAACCCTAATCCAGGCACACTTCGTTATGTGAATAGCTATAAGACCATTGATGGCAGAGGAGCCAAAGTGGATATTGCTTATGGACCTTGCATTACCATTCAAGGCGTCAATCACGTCATTATACATGGGATTAGCATCCACGATTGTGAACCAGGAAAGCCAGGGATGGTTAGGAGTAGTGAAGAGCATGTGGGGCATAGGGGAGGGTCAGATGGAGATGGAATTAGCATATTTGCTTCATCGAATATTTGGATAGATCATTGCTTCTTGGCTCGTTGTACGGATGACCTTATTGATGTTATTCATGCCTCAACTTCTGTCACTATCTCAAACAATTACTTCACCCACCATGACAAAGTAATGCTGCTAGGGCACAACGATGAATATACAGCCGATAGGATAATGAAAGTGACAGTAGCCTTCAATCGCTTTGCCAGCGGCCTCATAGAGAGAATGCCAAGAGAGGGACGTGGCACTGGTGGCAGGGTGAGACTAGGGTATGCGCATGTTGTGAACAACCAATATGAAGAGTGGATTCGGTACGCCATTGGAGGCAGTGCCGGTCCTACCATTTTAAGTGAAGCCAACTACTTCATAGCTCCAAACAACGCTGCTGCAAAACAGGTTACGAAGATGGAAACAAGTGATGAGATTAGCTGGAGTAACTGGAAATGGAGGACTTATAAGGATAAATTCATGAATGGAGCATATTTTGTTCCATCAGGCTATGGAAGTTGTGCTCCTTATTATTCTGCTTCACAATCTTTTGTCGCTGATCCTGCTTTCTTGGTCCCTCACTTAACTCTCCATGCTGGTCCTCTTCATTGTCTTCTTGCCAAACCTTATACATTCCTCAAAGATATATCTTTACAGACAATATTATTGGTGAGAGCAAATGCTCAAATGCTAATTAATGGCTATATACTGATCGACTCCTCCTCCACCCTCTTGTCTTCTAACCCTAGGGTTTGCTCTTCCACCATCTCCGATCATCATCATCAACATCATTGCTGTCCTCTCTCTCAACCTCCCACCGTCCCCAAATCCTTCAGTGGCCTCTGCAAACCTTTCCATTCTCGAGTTCCCACTTCGATTCGCCGTAGAGGCTTCTTCGTTAAGGCTACGCTTTTCATATGTTGTGTACTTGTATTGGATCTTTGGCTCTGGGATGAATATGTATTCTTTCATTGTTGTATTGGGTCTGAACTTGATCTTTTGGTTGTGTTGAAATTGCTTGTTTACTCCCGTTAA 1557 0.4419 MATFTSRILLLSCLLLPYLTTTLYADSTDNYLGTPELINSSFIPEIPKNLILNTIYSCWRANSNWASYRQALADCAVGFGKDAIGGKFGAIYKVTDASDDPVNPNPGTLRYVNSYKTIDGRGAKVDIAYGPCITIQGVNHVIIHGISIHDCEPGKPGMVRSSEEHVGHRGGSDGDGISIFASSNIWIDHCFLARCTDDLIDVIHASTSVTISNNYFTHHDKVMLLGHNDEYTADRIMKVTVAFNRFASGLIERMPREGRGTGGRVRLGYAHVVNNQYEEWIRYAIGGSAGPTILSEANYFIAPNNAAAKQVTKMETSDEISWSNWKWRTYKDKFMNGAYFVPSGYGSCAPYYSASQSFVADPAFLVPHLTLHAGPLHCLLAKPYTFLKDISLQTILLVRANAQMLINGYILIDSSSTLLSSNPRVCSSTISDHHHQHHCCPLSQPPTVPKSFSGLCKPFHSRVPTSIRRRGFFVKATLFICCVLVLDLWLWDEYVFFHCCIGSELDLLVVLKLLVYSR 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0942 518 Pfam Pectate lyase 111 300 IPR002022 -
Lele34g0942 518 PANTHER PECTATE LYASE 18-RELATED 51 112 IPR045032 GO:0030570
Lele34g0942 518 SMART amb_all 97 306 IPR002022 -
Lele34g0942 518 Gene3D - 52 377 IPR012334 -
Lele34g0942 518 PRINTS Pollen allergen Amb family signature 75 92 IPR018082 -
Lele34g0942 518 PRINTS Pollen allergen Amb family signature 98 123 IPR018082 -
Lele34g0942 518 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Lele34g0942 518 PRINTS Pollen allergen Amb family signature 355 378 IPR018082 -
Lele34g0942 518 PRINTS Pollen allergen Amb family signature 325 349 IPR018082 -
Lele34g0942 518 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Lele34g0942 518 SUPERFAMILY Pectin lyase-like 53 375 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0942 Lele-ChrLele34 18686826 18690807 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0942 8 383 Polysaccharide Lyase AT4G22080 58.313 5.58e-158 453