Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0929 ATGGAGGAGACTTCTCAAGGTCAAGGGATAGCTTTTGTGGGAGAGAACAGTAGTGGTGGTCTAGTATGTCCTCGAATGATGATGAATATGCCTATAGTGTCGTCTCATCATCATCATCAAAGTGGTCATCATCATCCATTAATAAATCCTAATGCTAATACACAATACACTAATTTAAACACTAGTAGTAATACTCTTTTCCTTACCACACCTTGCACTATTAACAGTACCTCTTCCTCCTCCTCCTCCTCTATTATGCTTCAAAACAGCAGCAACAACACGGCTGGGTTAAGCTTTGGCTGTTGTTTCATGGACATCGTCGTCGACAACAACATTGACAACAACAATGATGGTGGTTCATCTTCTTGTTCTTCTGTGAAGGCCAAGATCATGGCTCATCCTAACTACCTTCGTCTCCTCGCTGCTTACGTCAATTGTCAAAAGGTGGGCGCACCGCCGGAAACGGTGGCGAGGCTAGATGAAGCATATGCGGCGGCGGTGGCGGCCATGGGCGGCAACGGAGGTGGGTCAGGCTACACCGGCGAAGATCCGGCCCTGGATCAGTTCATGGAGGCATACTGTGAGATGTTGACAAAGTATGAGCAAGAGCTTTCCAAACCCTTCAACGAAGCTATGTTCTTCCTTCAGAACATCGAGCGTCAATTCAAAGCTCTCACCGTTGATTCTCCGATCAACTTTGCTTGTAATGAGAATACTGATAGGACAGAATCATCTGAAGATGAAATGGATCTTCAAAACAGCGGAAGAATGATTGATCCGCAGGCGTATGATAAGGATCTGAAGGATCGACTTCTCAGAAAGTACAGTGGATACTTGGGCAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAAAAGGGGAAGCTGCCTAAAGAAGCAAGGCGACAATTACTTGATTGGTGGAACGGACACTATAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCACTTGCAGAATCAACAGGGCTGGATCAGAAGCAAATAAACAACTGGTTCATTAATCAGAGAAAACGCCACTGGAAGCCTTCAGAAGACATGCAGTTCATGGTGGTTGATCCAATGCATCCTCATCACTACTTCATGGACAACATTCTTGGAACTCCATATCCCATGGATTTCTCTCATACTATGCTCTGA 1158 0.4534 MEETSQGQGIAFVGENSSGGLVCPRMMMNMPIVSSHHHHQSGHHHPLINPNANTQYTNLNTSSNTLFLTTPCTINSTSSSSSSSIMLQNSSNNTAGLSFGCCFMDIVVDNNIDNNNDGGSSSCSSVKAKIMAHPNYLRLLAAYVNCQKVGAPPETVARLDEAYAAAVAAMGGNGGGSGYTGEDPALDQFMEAYCEMLTKYEQELSKPFNEAMFFLQNIERQFKALTVDSPINFACNENTDRTESSEDEMDLQNSGRMIDPQAYDKDLKDRLLRKYSGYLGSLKQEFMKKRKKGKLPKEARRQLLDWWNGHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPMHPHHYFMDNILGTPYPMDFSHTML 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0929 385 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 53 355 - -
Lele34g0929 385 CDD homeodomain 298 350 IPR001356 GO:0003677
Lele34g0929 385 Pfam Homeobox KN domain 306 345 IPR008422 GO:0003677|GO:0006355
Lele34g0929 385 SMART HOX_1 288 353 IPR001356 GO:0003677
Lele34g0929 385 FunFam Homeobox protein knotted-1-like 2 291 353 - -
Lele34g0929 385 Pfam KNOX2 domain 180 226 IPR005541 GO:0003677|GO:0005634
Lele34g0929 385 SMART KNOX2_2 176 227 IPR005541 GO:0003677|GO:0005634
Lele34g0929 385 Pfam KNOX1 domain 126 163 IPR005540 GO:0003677|GO:0005634
Lele34g0929 385 ProSiteProfiles 'Homeobox' domain profile. 286 349 IPR001356 GO:0003677
Lele34g0929 385 SUPERFAMILY Homeodomain-like 288 365 IPR009057 -
Lele34g0929 385 MobiDBLite consensus disorder prediction 34 55 - -
Lele34g0929 385 SMART KNOX1_2 124 168 IPR005540 GO:0003677|GO:0005634
Lele34g0929 385 Pfam ELK domain 266 287 IPR005539 GO:0003677
Lele34g0929 385 ProSiteProfiles ELK domain profile. 266 286 IPR005539 GO:0003677
Lele34g0929 385 ProSitePatterns 'Homeobox' domain signature. 324 347 IPR017970 GO:0000981|GO:0006355
Lele34g0929 385 Gene3D - 284 356 - -
Lele34g0929 385 SMART ELK_2 266 287 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0929 Lele-ChrLele34 18612300 18617627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0929 118 385 Homeobox Transcription Factor Family AT1G62360 71.685 7.20e-120 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele34g0929 KNOX2 7.2e-21 No_clan