Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0889 ATGGTTTCTCTGGAGGATTCTCATTCCAATTCCAATCGTTTCCCTTTAACCCGAAGCTATTACTCTACTACCACTTCCGCCAACAATTCTTCATCCAGAATCCAGCGACACACTGGAAGGTCTATGCGAACTGTACGCTCTAATTTCTTCCAGGATGACCATAGCTGCTCCTTCACCACGGCCACCGAGAAATCTACTTGCCTGTCGGAAAACATGACCGATTCGATCATCGACCTCCGGCTTGGCGAGCTCGCATCGAAGAACAGCAAATCTGCGAAATTTTCTGCTACAGAGGAGGAGTTGCTTGATCTTTCTCAAGCTTTCAGTGATTTCTCGGCTTGTGGCAGCGATATTTCTGGGGAGCTGCAGAGGCTGGCGAGTTTGCCGTCGCCGGAGAATGTGCCCAAGGGCGATGCCAGTGGTGAAGCAGAGAAGGAGCCGGAACCGGAGCCGTGTCTGGGTTTTCTGCAGAGAGAGAATTTCTCTACTGAGATTATTGAGAGTATTTCGCCGGAGGATCTTCAGCCGGCGGTGAAGATCTGTATCGCTGGGCTAGAGTCACAGTCGGTTGCTGTGAAGCGATCTGCTGCGGCTAAGCTCAGGCTTCTGGCTAAGAATCGTGCGGATAATAGAGCTTTGATCGGGGAGTCTGGGGCGGTTCCCGCTTTGGTTCCCCTGCTTCGTTGCAGTGATCCGTGGACGCAGGAACACGCCGTCACGGCCTTGTTGAATCTCTCTCTCCACGAAGATAATAAGATGCTGATTACCAATGCAGGAGCTATTAAGTCACTGATTTATGTGCTCAAAACCGGAACAGAGACATCGAAGCAGAACGGGGCATGTGCGCTTCTGAGCCTTGCTTTGGTTGAAGAAAACAAGAGTTCCATTGGGGCTAGTGGGGCAATACCACCGCTTGTTTCCTTGCTATTGAGTGGTTCCAGCAGGGGAAAGAAGGACGCTCTGACGACGCTGTATAAGCTCTGCTCTATAAAGCCAAACAAGGAGAGAGCGGTGAGCGCCGGAGCAGTGAAGCCTCTTGTGGAGATGGTGGCAGAGCAAGGGACGGGTATGGCTGAGAAGGCAATGGTGATACTTAATAGCTTGGCCGCTATTCCGGAAGGGAAGGAAGCAATTGTTGAAGAAGATGGAATAGCTGCTCTTGTTGAGGCGATTGAAGATGGCTCTGTGAAGGGAAAGGAATTTGCTGTTTTGACACTTCTACAGCTATGTGCTGACAGTGTGAGGAATAGAGGGTTGCTTGTGAGGGAGGGTGGAATACCCCCTCTGGTTTCTCTTTCTCAGACCGGAAGTGTTAAAGCTAAGCCTAAGGAAAAGTTCGGGAATGTAAATATTGGATCTTTCCTTGTTGACACCGGCACTGTGATTCTTAAGATTGAGAAATCCCCAAGTACACCCCTTCCTGCAGTATTTAGATAA 1437 0.4997 MVSLEDSHSNSNRFPLTRSYYSTTTSANNSSSRIQRHTGRSMRTVRSNFFQDDHSCSFTTATEKSTCLSENMTDSIIDLRLGELASKNSKSAKFSATEEELLDLSQAFSDFSACGSDISGELQRLASLPSPENVPKGDASGEAEKEPEPEPCLGFLQRENFSTEIIESISPEDLQPAVKICIAGLESQSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLHEDNKMLITNAGAIKSLIYVLKTGTETSKQNGACALLSLALVEENKSSIGASGAIPPLVSLLLSGSSRGKKDALTTLYKLCSIKPNKERAVSAGAVKPLVEMVAEQGTGMAEKAMVILNSLAAIPEGKEAIVEEDGIAALVEAIEDGSVKGKEFAVLTLLQLCADSVRNRGLLVREGGIPPLVSLSQTGSVKAKPKEKFGNVNIGSFLVDTGTVILKIEKSPSTPLPAVFR 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0889 478 FunFam U-box domain-containing protein 4 164 316 - -
Lele34g0889 478 SUPERFAMILY ARM repeat 174 439 IPR016024 -
Lele34g0889 478 Pfam Armadillo/beta-catenin-like repeat 209 246 IPR000225 GO:0005515
Lele34g0889 478 Pfam Armadillo/beta-catenin-like repeat 291 329 IPR000225 GO:0005515
Lele34g0889 478 PANTHER U BOX DOMAIN-CONTAINING 138 441 - -
Lele34g0889 478 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 218 260 IPR000225 GO:0005515
Lele34g0889 478 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 341 383 IPR000225 GO:0005515
Lele34g0889 478 MobiDBLite consensus disorder prediction 126 150 - -
Lele34g0889 478 Gene3D - 162 446 IPR011989 -
Lele34g0889 478 SMART arm_5 248 288 IPR000225 GO:0005515
Lele34g0889 478 SMART arm_5 207 247 IPR000225 GO:0005515
Lele34g0889 478 SMART arm_5 371 411 IPR000225 GO:0005515
Lele34g0889 478 SMART arm_5 289 329 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0889 Lele-ChrLele34 18279358 18282041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0889 18 443 U-box Gene Family AT2G23140 39.030 4.82e-75 246