Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0888 ATGATTGTTTCTCAGCTGACGTCTGGAATATCCTATTTTTCTGTCAGTTCTTCGGAAACATTGGGAATGGGCCCTGGCAAGCTCTTCATTGGTGGGATTTCATGGGACACAAATGAAGAACGACTCAGACAGTACTTTCAGAATTTTGGAGATGTGGTGGAAGCGGTGATAATGAAGGATCGGACCACAGGGCGTGCTCGTGGTTTTGGATTCATTGTTTTCTCTGATCCTTCTGTTGCTGAACAAGTTGTTATGGAAAAGCATGTCATCGATGGTAGAACTGTTGAAGCCAAAAAGGCCGTCCCTAGGGATGATCAGAACATTTCTAACAGAAGCAACAGCAGTATGCATGGATCACCTGGTCCAACCCGTACAAAGAAGATATTTGTTGGAGGTCTTGCGTCCACAGTTACTGAGAGTAACTTCAAGAAGTATTTTGATCAATTTGGAACAATTACAGATGTAGTTGTGATGTATGACCATAACACTCAAAGACCAAGAGGTTTTGGATTCATCACCTATGATTCTGAGGAAGCAGTGGATAAGGTTCTGTATAGAACATTTCATGAACTGAATGGTAAGATGGTTGAGGTTAAGCGGGCTGTTCCGAAGGAATTATCCCCAGGTCCAAGTAGAGGCCAATTAGCTGGATCTATCTATGGTTTAAGTAGAGTTAGTGGCTTTTCTAATAGTCTCATTCAGGGATATAATCCTAGCTTGGTTGGAGGGCATGGACATAGAGCAGATGGCAGATTTAGTCCTGTTACTGTTGGTCGAAATGGATATCCTCCATTAAGCCCCAGTTATGGGACAGGGTTCAATTTTGAACTATCATTTAGTCAAAATGGAAATTCAAACTTAACTTCTTCCCTTATGTTAGGACGAGCTTTGAACCCTTCATACAATGGAAACTCAAGCAGGTACCACAATGTCATGGGCTATACTGGTACAAGTGTAGGAAACAATTCAGCAAATCAGAATTTTTGGGGGAACGAGAACATTAGCTTTGCTAATAATCCTACAAATTCTGATGGTTTTCATGGGTATGGAAGTCAAAATTCAGGCATGGGTTCTTTTGGTGATATTGGAACACTGTGGAGTTCCTCCCATAGTGCAGATCAAGCTGGAACTGTTGGCTCTGGCTATGGTAAGGGCACTCTTAACTATGGCCGTGGAGATGTTAATTTTAGGCCAAAAGCAGTAGGATACGGAAAAGGTAGCGATGCCATTGCTGAATCAGTGTCATCTTATGCCCTATCCAATGGCAGTTTTGATGGGGCATATAAAGACATTTACGAAGCTGGGTCATTTTTTGGTGACCACACCTGGAGATCATCACCCTCGGAACTAGAAGATACCGGTTCTCTTGGTTATGACCTTGGAAATGCTGTTTCAGATTTGATAACCAAAAGCTCTGGTGGCCACATTGAGGCTTATGCTGTTGCCAATAGACAATCAAATAGAGGAATTGCTGCGTAG 1479 0.4239 MIVSQLTSGISYFSVSSSETLGMGPGKLFIGGISWDTNEERLRQYFQNFGDVVEAVIMKDRTTGRARGFGFIVFSDPSVAEQVVMEKHVIDGRTVEAKKAVPRDDQNISNRSNSSMHGSPGPTRTKKIFVGGLASTVTESNFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLYRTFHELNGKMVEVKRAVPKELSPGPSRGQLAGSIYGLSRVSGFSNSLIQGYNPSLVGGHGHRADGRFSPVTVGRNGYPPLSPSYGTGFNFELSFSQNGNSNLTSSLMLGRALNPSYNGNSSRYHNVMGYTGTSVGNNSANQNFWGNENISFANNPTNSDGFHGYGSQNSGMGSFGDIGTLWSSSHSADQAGTVGSGYGKGTLNYGRGDVNFRPKAVGYGKGSDAIAESVSSYALSNGSFDGAYKDIYEAGSFFGDHTWRSSPSELEDTGSLGYDLGNAVSDLITKSSGGHIEAYAVANRQSNRGIAA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0888 492 CDD RRM2_DAZAP1 124 203 IPR034131 GO:0003723
Lele34g0888 492 SMART rrm1_1 127 199 IPR000504 GO:0003723
Lele34g0888 492 SMART rrm1_1 27 98 IPR000504 GO:0003723
Lele34g0888 492 CDD RRM1_hnRNPA_hnRNPD_like 28 98 - -
Lele34g0888 492 MobiDBLite consensus disorder prediction 100 124 - -
Lele34g0888 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 102 IPR000504 GO:0003723
Lele34g0888 492 FunFam Heterogeneous nuclear ribonucleoprotein 1 123 210 - -
Lele34g0888 492 FunFam Heterogeneous nuclear ribonucleoprotein 1 25 107 - -
Lele34g0888 492 MobiDBLite consensus disorder prediction 106 121 - -
Lele34g0888 492 SUPERFAMILY RNA-binding domain, RBD 21 121 IPR035979 GO:0003676
Lele34g0888 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 126 203 IPR000504 GO:0003723
Lele34g0888 492 SUPERFAMILY RNA-binding domain, RBD 125 213 IPR035979 GO:0003676
Lele34g0888 492 Gene3D - 123 209 IPR012677 -
Lele34g0888 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 128 185 IPR000504 GO:0003723
Lele34g0888 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 94 IPR000504 GO:0003723
Lele34g0888 492 Gene3D - 26 108 IPR012677 -
Lele34g0888 492 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 25 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0888 Lele-ChrLele34 18271926 18274993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0888 28 205 Eukaryotic Initiation Factors Gene Family AT2G36660 30.159 1.53e-14 74.3