Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele34g0870 | ATGGGTGATCATGAGGTTCAACAAAAACCAGAACAAGAACCCTTGCTCTCAAACTCAAGAAATCGTACTTCTAATCTCAATGAGAAGATGAATGACCTACAGAGAAGAAGGCGTCCCCGGCATGGAGATGGTTCTTCTGAGAATGGTGATATCAACAAGGAAGAAGAAGAAAATCTGATTCATCAAACTCCACCATTATCAGACTTAGATTCTGATCATTTCAAATCCAAGAAACTAGTTCTAATGTTCTTAACTGCCTACCTAGGATTAGGAACCCTATCCTTCTTCCTCGTAAGGCATCAAATAAAGGGCATAGAGACCAATGGCTTCCTTGATGCCCTTTACTTCTGTGTTGTCACTATGACCACAGTAGGGTATGGAGACCTTGTTCCCAACAGCAAATTGGCCAAACTTCTTGCATGTGTCTATGTCTTCACAGGCATGGCTCTTGTAGGCATGATCATGAGCAAAGCAGCCGATCACTTTCTTGAGAAGCAAGAAATCCTACTCGTTCGAGCCATCCACGTGGGCGAAAATGTGAGTCCTTCGGAACTTCTTGAAGAGGTTGAGGCACACAAAGTGAAGTACAAGTTCTTGATAACTTCAGCTGTTCTTGTAGTTCTCATGATTGTAGGGACTGTTTTTCTGGGTTTGGTTGAGAATCTAGAGCTTGTGGATGCCTTTTATTGTGTTTGTTCTACTGTTACTACTTTAGGGTATGGTGACAAGAGCTTCTCTACAAGTGTTGGACGTGTTTTTGCTGTGTTTTGGATATTGAGTAGCACCATTTGCTTGGCTCAGTTTTTCTACTATCTAGCTGAACTTTACACTGAAGGTAGACAAAAATCACTGGTCAGAACTGTTCTTTCCAGAAAACTCTTGCGCTCAGATCTTGAGGCAGCAGATCTTGATAATGACAATGTTGTTAGCGCTGCAGAGTTCATTGTGTACAAGTTGCAGGAAATGGGAAGGATCAACCAACAAGATATTTCTATCGTGATGGAGGCTTTTAGGAAACTTGACTATGATAAATCAGGAACTTTGACTGAAGCTGATCTCAAACCTTCTGGGTCATCTTGA | 1080 | 0.4167 | MGDHEVQQKPEQEPLLSNSRNRTSNLNEKMNDLQRRRRPRHGDGSSENGDINKEEEENLIHQTPPLSDLDSDHFKSKKLVLMFLTAYLGLGTLSFFLVRHQIKGIETNGFLDALYFCVVTMTTVGYGDLVPNSKLAKLLACVYVFTGMALVGMIMSKAADHFLEKQEILLVRAIHVGENVSPSELLEEVEAHKVKYKFLITSAVLVVLMIVGTVFLGLVENLELVDAFYCVCSTVTTLGYGDKSFSTSVGRVFAVFWILSSTICLAQFFYYLAELYTEGRQKSLVRTVLSRKLLRSDLEAADLDNDNVVSAAEFIVYKLQEMGRINQQDISIVMEAFRKLDYDKSGTLTEADLKPSGSS | 359 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele34g0870 | 359 | Pfam | Ion channel | 83 | 160 | IPR013099 | - | |
| Lele34g0870 | 359 | Pfam | Ion channel | 204 | 276 | IPR013099 | - | |
| Lele34g0870 | 359 | ProSitePatterns | EF-hand calcium-binding domain. | 302 | 314 | IPR018247 | - | |
| Lele34g0870 | 359 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
| Lele34g0870 | 359 | SUPERFAMILY | EF-hand | 272 | 354 | IPR011992 | - | |
| Lele34g0870 | 359 | SUPERFAMILY | Voltage-gated potassium channels | 194 | 290 | - | - | |
| Lele34g0870 | 359 | MobiDBLite | consensus disorder prediction | 29 | 55 | - | - | |
| Lele34g0870 | 359 | ProSitePatterns | EF-hand calcium-binding domain. | 341 | 353 | IPR018247 | - | |
| Lele34g0870 | 359 | Coils | Coil | 16 | 36 | - | - | |
| Lele34g0870 | 359 | Gene3D | - | 72 | 169 | - | - | |
| Lele34g0870 | 359 | FunFam | Two-pore potassium channel 1 | 178 | 286 | - | - | |
| Lele34g0870 | 359 | Gene3D | - | 287 | 356 | - | - | |
| Lele34g0870 | 359 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
| Lele34g0870 | 359 | PANTHER | POTASSIUM CHANNEL, SUBFAMILY K | 78 | 331 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
| Lele34g0870 | 359 | SUPERFAMILY | Voltage-gated potassium channels | 79 | 170 | - | - | |
| Lele34g0870 | 359 | Gene3D | - | 180 | 286 | - | - | |
| Lele34g0870 | 359 | PRINTS | Two pore domain K+ channel signature | 119 | 147 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 | |
| Lele34g0870 | 359 | PRINTS | Two pore domain K+ channel signature | 236 | 245 | IPR003280 | GO:0005267|GO:0016020|GO:0071805 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele34g0870 | Lele-ChrLele34 | 18154737 | 18156456 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele34g0870 | 48 | 353 | Ion Channels | AT5G55630 | 58.170 | 3.23e-130 | 375 |