Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0866 ATGTTATTAGATGTGGAAGTGATGGGAAACAAGAAGAGGAAGAGATGTGGGAGGGTTTTCAGATTCAAGAACTTTGGTGAGTCTGGTTATCCTGTGGAGTTTAAAGGGCCATTTCGTGAGAACGTTAATGCTTTGCTAGAGTTTGCCAATTCTGAGTCTAAATACTTAGGCTTTGGAATGCCCATTTGGTCTTTCCAACTTGAAGTTCATCGCCACCCTCCTTCTCATATCTTCTTGTTTGTCATCGAAGAAGCCACTGAAACATCTATGAACCGCCACTGCAAGCACTGTCAATATGTTGGATGGGGGAATAATTTGATATGCAATAAGAAGTATCACTTTGTGTTGCCATCAAAGGAGACATTGGCTGCGAGTTTGAGCTGCGAAGTGCCGTGTGAAGCAATTACTACTGGAGCAGCTACGAGCAACAATATTAATAACGGTAAGTCAAAATTAATAGAATTACAGGGCCATATGATGCAAGCTGTTTTTCACTCTAATGGATTCGGGCATTTGCTCTGTGTCAATGGCCTCGAAACCGGGTCGGATCTAGCCGGACACCACATCATGGACTTCTGGGATCGCTTGTGCACTGGACTGCAAGCAAGGAAAGTGAGCTTGAATGACGTGTCACAGAAAAAAGGCATGGAATTAAAACTTATCAATGGAATAGCATATGGGGAACCATGGTTTGGAAGGTGGGGCTACAAATTTGGAAGAGGATGCTTTGGTGTGACTCAATCTACATACCAGAAAGCCATTGAAGCAATAAGAAGCATCCCACTTTACCTTCTGAATAGCCACCAAATTGCCAACTTTCCTTCCTACCATGACATACCAATCATCTTCTCAAGGTACCAAACACTCTCTGATCAAACCCTAGTTACACTTGGTGACCTATACCACTTCATGTTGGAGCTCAAGTCTCACCTTCCTCACCGCGAAAACTACGCCGCTGCCACCGATCCCTATAAGACCGGCAGCTTCTCCGTCGAAGCCAATTGCCGTTGGTCCCCGAAAAGAATCGAGATGGCAACTAGGGTTATTGTTGAAGCCTTGAAAAGAGCTGAGTTCAGGTGGATTTCAAGGCAAGAGGTTAGAGATGCTGCTCGAGCCTACATCGGCGACACCGGTTTGCTAGATTTCGTGTTGAAATCTTTGGGAAATCACGTTGTTGGCAATTATATGGTTCGTCGAAGCTTGAATCCTGTCACGAAAGTTCTTGAATATTGCTTGGAAGACATCTCCAATATTGTTTTCCCCACTCATCATCATCAAGGTAATAATAATAATAATAATAACACTAACAGAAGCATAAGGGACAGATACAAAATCACTAGGGCTCAAGTAACGAAGGACATGTTTTATTTGTACAAGCACATCCTTAAAGACCCCAAACAAATTACACAAGGATCGATTTTCTCAGCAATCCCATTGGCAGCGAGGATAATTCTGGACACTAAGTATCTGATCAAAGACTACTTTGGGGAGCTTCCATTTCAAGCTGATCTTGGGATGGACGGAAAACTAAGTCTTAACTGTACAATAATGTTGAGAAATTACAACAACACCTTAATGATGCCACCGTACGAGTGTATCACGTTGAAGAGTAGCGCCACCATTAATGAGCTGAAGCAAGAAGTTGAGAGAAACTTCAGAGAGATATATTGGGGATTAAGGAGTTTTTGTGTGGATTCGATTAAGAACTTGGAAGTTTGTGGCGGGAATGATCTGGTTTTTGGGATGGTGGAAGTGGGAAGAAAGCTAGTGGTTGAAGGATGGATTGATAATAATAATGTTAATGTTAATGGGGATAAGAACATTAATAACAAAAACATAGGAGAGATTTGTGAGGTTAATGAGAATTATGGGATGGTTGTGGAATGTAGTTGTGGGACAAAGGAAGACGATGGAGAGAGAATGGTGTGTTGTGATATTTGTGAAACGTGGCAGCATACGAGGTGTGTTAGGATTCCGAATGATGAACAAGTTCCTTCTATATTTCTCTGCAAAAGGTGTGAACAAGAAATTGTTATGTTCCCTTCCTTGCCATAG 2055 0.4209 MLLDVEVMGNKKRKRCGRVFRFKNFGESGYPVEFKGPFRENVNALLEFANSESKYLGFGMPIWSFQLEVHRHPPSHIFLFVIEEATETSMNRHCKHCQYVGWGNNLICNKKYHFVLPSKETLAASLSCEVPCEAITTGAATSNNINNGKSKLIELQGHMMQAVFHSNGFGHLLCVNGLETGSDLAGHHIMDFWDRLCTGLQARKVSLNDVSQKKGMELKLINGIAYGEPWFGRWGYKFGRGCFGVTQSTYQKAIEAIRSIPLYLLNSHQIANFPSYHDIPIIFSRYQTLSDQTLVTLGDLYHFMLELKSHLPHRENYAAATDPYKTGSFSVEANCRWSPKRIEMATRVIVEALKRAEFRWISRQEVRDAARAYIGDTGLLDFVLKSLGNHVVGNYMVRRSLNPVTKVLEYCLEDISNIVFPTHHHQGNNNNNNNTNRSIRDRYKITRAQVTKDMFYLYKHILKDPKQITQGSIFSAIPLAARIILDTKYLIKDYFGELPFQADLGMDGKLSLNCTIMLRNYNNTLMMPPYECITLKSSATINELKQEVERNFREIYWGLRSFCVDSIKNLEVCGGNDLVFGMVEVGRKLVVEGWIDNNNVNVNGDKNINNKNIGEICEVNENYGMVVECSCGTKEDDGERMVCCDICETWQHTRCVRIPNDEQVPSIFLCKRCEQEIVMFPSLP 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0866 684 ProSitePatterns Zinc finger PHD-type signature. 629 673 IPR019786 -
Lele34g0866 684 SUPERFAMILY FYVE/PHD zinc finger 626 676 IPR011011 -
Lele34g0866 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 618 680 IPR013083 -
Lele34g0866 684 ProSiteProfiles Zinc finger PHD-type profile. 626 676 IPR019787 -
Lele34g0866 684 CDD PHD_MMD1_like 628 673 - -
Lele34g0866 684 Pfam PHD-finger 629 675 IPR019787 -
Lele34g0866 684 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 678 - -
Lele34g0866 684 SMART PHD_3 628 674 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0866 Lele-ChrLele34 18134376 18137038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0866 11 684 PHD Transcription Factor Family AT5G22260 51.437 0.0 671
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele34g0866 PHD 9e-09 CL0390