Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0847 ATGGACTCAAAAACTAGTGCTAGAGCTGCCCAGAAACAGCATCATAAGACGGCTGGGATTCAAACAATAGAGGAAAAAGACATAAAATCTTCAAAGACGGGCAAATCTGAACCGGCTGTGCCAGAAGATTTATCAAAATATGTTAAGGACACAGGGAAGCATTACACTGGAGACACTTCTGAAAACAAGAAGCTAGGAGTTTCAAAGCCAAAGGAGTCAGCTGATTCCTTGATTAGTAAATTTGGTTCTGCTGTTTCCTTATCTGTTAATGAACAACCATCTGGAGGAGTTGACCATGTTAATGGAAATAGAGGTTTGCAGGAAAGCTCAATTGATCAAGAAAAGAAAACATCAGAATATGGAAGTGTGAAGAGCAGTTCTGTTTCTGCTAAAGTTAGCGATGGGGCCAGCAGCCTGGCGAAGACCAGTGGAAGTGCCAAGATTAGTGATCGAGTTGATCTTGTTGAGAGTGGCAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGATGTGAGCGATGAGAGCACTTGCAGCAGCTTTAGTAGCAGTGTCAACAAGCCTCACAAGGCAAATGACTTGAGATGGGAAGCTATTCAAGCTGTCCGATCTAAAGATGGGGCTTTGGGCTTAGGTCACTTTAGACTATTGAAGAGGTTGGGTTGTGGGGATATTGGGAGTGTGTATCTATCAGAGTTGAGTGGAACTAAATGTTATTTCGCAATGAAGGTAATGGATAAAGGGTCTTTAGCGAGTCGTAAAAAGCTGCTTCGTGCTCAGACAGAAAGAGAAATACTGCAATCACTTGACCATCCATTTCTCCCAACATTGTATACCCATTTTGAGACAGAGAAGTTCTCATGCTTGGTAATGGAATTCTGCCCAGGTGGAGACCTGCACACTCTTAGGCAGAGGCAGCCAGGGAAGCATTTTCCTGAGCAAGCAGTAAAATTTTACGTGGCAGAGGTGCTGCTGTCGTTGGAGTACCTACACATGCTTGGCATTGTCTACCGTGATCTAAAGCCCGAAAATGTCCTTGTTAGGGATGATGGACACATTATGCTTTCGGATTTCGACCTTTCCCTCCGTTGTGCTGTTAGTCCAACTCTTGTTAAAAGTTCAGTCATGGAATCTGATCCTTTAAGAAAGAATCCTGTATATTGTGTGCAGCCTGCTTGTATTGAGCCGCCTTCCTGCATCCAGCCATCCTGTGTTGCTCCTACAACATGCTTTTCACCTCGGATCTTTTCTAGCAAATCAAAGAAGGATCGGAAACCCAAAACTGAAATTGGAAACCAAGTGACCCCATTGCCCGAGCTCATTGCTGAGCCTACCGATGCACGATCTATGTCATTTGTTGGAACCCATGAATACTTGGCACCTGAGATTATCAAGGGAGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTTTTGTTCGGTAAGACTCCTTTCAAGGGATCTGGGAACCGAGCTACATTGTTTAATGTCGTAGGCCAGCCTCTCCGATTTCCAGAAGCGCCTGTTGTAAGTTTTGCAGCCAGGGATCTCATAAGGGGGTTGCTTGTGAAGGAACCACAGCACAGGCTGGCTTATAAACGAGGCGCCACTGAGATAAAGCAACATCCCTTTTTTGAAGGCGTGAATTGGGCACTTATTCGCTGCGCTACCCCACCGGAGATCCCAAAGCCTGTAGAGTATGAGAAGATAACTTCCCCGGCCTCATCAGCCGCCGAAAAGGCCGGCCAACACCACCATATGTCAATTCCTGATCAGAAAGGTTCTGGTAATTATCTTGAGTTTGATTTCTTCTAG 1833 0.4506 MDSKTSARAAQKQHHKTAGIQTIEEKDIKSSKTGKSEPAVPEDLSKYVKDTGKHYTGDTSENKKLGVSKPKESADSLISKFGSAVSLSVNEQPSGGVDHVNGNRGLQESSIDQEKKTSEYGSVKSSSVSAKVSDGASSLAKTSGSAKISDRVDLVESGKSSICRGSTSSDVSDESTCSSFSSSVNKPHKANDLRWEAIQAVRSKDGALGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEVLLSLEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKSSVMESDPLRKNPVYCVQPACIEPPSCIQPSCVAPTTCFSPRIFSSKSKKDRKPKTEIGNQVTPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPEAPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEYEKITSPASSAAEKAGQHHHMSIPDQKGSGNYLEFDFF 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0847 610 FunFam Serine/threonine-protein kinase AGC1-7 444 569 - -
Lele34g0847 610 SMART serkin_6 213 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele34g0847 610 MobiDBLite consensus disorder prediction 579 599 - -
Lele34g0847 610 MobiDBLite consensus disorder prediction 88 127 - -
Lele34g0847 610 FunFam Serine/threonine-protein kinase D6PK-like 211 296 - -
Lele34g0847 610 MobiDBLite consensus disorder prediction 1 73 - -
Lele34g0847 610 ProSiteProfiles Protein kinase domain profile. 213 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele34g0847 610 Gene3D Phosphorylase Kinase; domain 1 211 296 - -
Lele34g0847 610 MobiDBLite consensus disorder prediction 160 183 - -
Lele34g0847 610 FunFam serine/threonine-protein kinase D6PK-like 297 364 - -
Lele34g0847 610 Gene3D Transferase(Phosphotransferase) domain 1 445 569 - -
Lele34g0847 610 Pfam Protein kinase domain 448 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele34g0847 610 Pfam Protein kinase domain 214 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele34g0847 610 MobiDBLite consensus disorder prediction 42 70 - -
Lele34g0847 610 SUPERFAMILY Protein kinase-like (PK-like) 190 580 IPR011009 -
Lele34g0847 610 MobiDBLite consensus disorder prediction 88 108 - -
Lele34g0847 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Lele34g0847 610 MobiDBLite consensus disorder prediction 18 33 - -
Lele34g0847 610 CDD STKc_phototropin_like 212 570 - -
Lele34g0847 610 PANTHER FLIPPASE KINASE 1-RELATED 19 575 - -
Lele34g0847 610 Gene3D Transferase(Phosphotransferase) domain 1 297 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0847 Lele-ChrLele34 17993348 17996316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0847 110 610 AGC Kinase Gene Family AT5G47750 85.629 0.0 868
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lele34g0847 Pkinase 5e-36 CL0016