Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele34g0810 | ATGGATATTAGCGAAGATGTTAGGGCAGCTCATAAACGAGAATTCGCCGATTTCCTGGATCAGGATGTTGGGAAAGGGATATACATGGACGAGATCAAAGCAATGATCAACCACAAGCGCCGTCGCCTCATCGTCAATATCTCCGATCTTCATAGCTTTCGTGATTTGGGTAATAGGATTCTCAGGAACCCTAGTGAGTACATACAATCATTCTGTGATGCAGTGACGGATGCTGCTCGTGCTATTGACACCAAGTATTTGAAGGAAGGAGAGCAAGTGCTTGTAGGATTTGAAGGCCCCTTTGTTTCCCGTCGTGTCACCCCAAGGGAGCTTCTATCTGAATTCATAGGTTCCATGGTTTGCGTCGAGGGCATTGTTACTAAATGTTCGCTTGTAAGGCCAAAGGATGAAAGTGGCAACTTATTGGTGACTGAGTATGGATTGTGCAAATATAAAGATCATCAAACCTTATCCATGCAAGAAGTTCCTGAGAATTCTGCACCTGGTCAGCTTCCAAGAACAGTAGATGTGATAATAGAGGATGACCTTGTTGACTCTTGCAAACCTGGGGATCGTGTGGCTATTGTGGGGATATATAAGGCCCTTCCAGGGAGAAGTAAAGGCAGTGTGAATGGAGTATTCAGGACTGTGCTCATAGCCAACAATGTATCTCTTCTCAACAAAGAGGCTAATGCACCAATCTACAGTGCTGAAGATCTGAAAAACATAAAGAAGATTGCCGAAAGAGATGATGCATTTGACCTACTTGGTAATTCACTTGCACCTTCTATTTATGGGCATTCCTGGATAAAGAAAGCGGTGATTTTGTTGTTGCTTGGTGGAGTCGAAAAGAACTTAAAGAATGGTACCCATTTGCGAGGTGACATTAACATGATGATGGTTGGTGATCCGTCTGTTGCCAAGTCTCAACTATTAAGAGCAATAATGAATATTGCTCCCTTGGCAATATCTACTACAGGTCGGGGTTCTTCTGGGGTTGGTTTAACCGCAGCGGTTACTTCTGATCAAGAAACAGGGGAAAGAAGGCTAGAAGCTGGAGCGATGGTTCTTGCTGATCGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAACGATCAAGATCGGGTTGCTATACATGAAGTTATGGAGCAGCAAACTGTAACTATAGCCAAAGCTGGTATCCATGCATCTCTTAATGCTCGATGCAGTGTGGTGGCTGCTGCAAATCCCATATATGGAACTTATGACCGATCATTGACTCCAACAAAAAATATTGGACTCCCAGACTCCTTGCTTTCCCGATTTGATCTTCTGTTTATTGTCTTGGATCAAATGGACCCTGATATTGATCGTCATATCTCAGAGCATGTCTTGCGTGAGGCAGCATTTGATGGTGCCTCAAGATATGGAGGAGAAGATGATGCCGACACTGACTCAGCTGTCTTTGTCAAATATAACCGGATGCTTCATGGAAAGAAAACAGCAAAAGGCCGCAAGCGCGATGTTCTCACAATCAAGTTTCTTAAAAAGTATATTCATTATGCTAAGCATAGGATTCAACCTGAACTTACTGATGAGGCATCTGACCACATTGCCACAGCTTATGCTGATCTCAGAAATGCTGGTTCAAATGCTACGACTGGAGGAACCCTTCCTATCACCGCTAGAACTTTGGAAACCATAATACGTCTCTCAACGGCTCATGCCAAACTAAAATTGAGCAGACAGGTTTTTAGGTCCGATGTTGAAGCTGCTCTGAAAGTTCTTAATTTTGCAATATATCACAAAGAACTTACAGAAATGGAGGAACGTGAGCATGAGAGGGAGAGAGAAATGGAGAGGAAACGCAGGGCTGAGCAGCATCCTGGTGAAAATGATGAACCTAGTCGAGCTGAAGCCATGGAAGTTGACGAGACTTCGGCAGCCCAATCTGCTACCGGTCTCACACCTGAAAGAATCGAAGCGTTCAATTCTTTATTTGGTCAGCATATGCGTACCAATCGCTTGGATCTCATATCCATTTCAGATATAGAGAATGTTGTCAACCAAGGGGCAGAATCCAGTTACAGCAGAGAAGATATATTACTCCTATTAGAGAAATTGCAAGATGACAATAGAGTGATGATAGCTGACGGAGTGGTGCATATGATATCATAG | 2160 | 0.4343 | MDISEDVRAAHKREFADFLDQDVGKGIYMDEIKAMINHKRRRLIVNISDLHSFRDLGNRILRNPSEYIQSFCDAVTDAARAIDTKYLKEGEQVLVGFEGPFVSRRVTPRELLSEFIGSMVCVEGIVTKCSLVRPKDESGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIIEDDLVDSCKPGDRVAIVGIYKALPGRSKGSVNGVFRTVLIANNVSLLNKEANAPIYSAEDLKNIKKIAERDDAFDLLGNSLAPSIYGHSWIKKAVILLLLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRHISEHVLREAAFDGASRYGGEDDADTDSAVFVKYNRMLHGKKTAKGRKRDVLTIKFLKKYIHYAKHRIQPELTDEASDHIATAYADLRNAGSNATTGGTLPITARTLETIIRLSTAHAKLKLSRQVFRSDVEAALKVLNFAIYHKELTEMEEREHEREREMERKRRAEQHPGENDEPSRAEAMEVDETSAAQSATGLTPERIEAFNSLFGQHMRTNRLDLISISDIENVVNQGAESSYSREDILLLLEKLQDDNRVMIADGVVHMIS | 719 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele34g0810 | 719 | Gene3D | - | 106 | 227 | IPR012340 | - | |
| Lele34g0810 | 719 | SUPERFAMILY | Nucleic acid-binding proteins | 13 | 222 | IPR012340 | - | |
| Lele34g0810 | 719 | SMART | AAA_5 | 294 | 447 | IPR003593 | - | |
| Lele34g0810 | 719 | Gene3D | - | 234 | 616 | IPR027417 | - | |
| Lele34g0810 | 719 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 138 | 635 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 582 | 597 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 454 | 464 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 144 | 158 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 170 | 182 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein 3 signature | 421 | 431 | IPR008046 | GO:0003677|GO:0005524|GO:0006270|GO:0042555 | |
| Lele34g0810 | 719 | MobiDBLite | consensus disorder prediction | 602 | 633 | - | - | |
| Lele34g0810 | 719 | Gene3D | - | 3 | 99 | - | - | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 432 | 440 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 381 | 394 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 293 | 308 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 405 | 417 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 353 | 367 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | ProSiteProfiles | MCM family domain profile. | 252 | 458 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | SMART | mcm | 104 | 595 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | Pfam | MCM OB domain | 146 | 202 | IPR033762 | - | |
| Lele34g0810 | 719 | FunFam | DNA helicase | 5 | 104 | - | - | |
| Lele34g0810 | 719 | Pfam | MCM N-terminal domain | 12 | 84 | IPR027925 | - | |
| Lele34g0810 | 719 | ProSitePatterns | MCM family signature. | 361 | 369 | IPR018525 | GO:0003677|GO:0005524|GO:0006260 | |
| Lele34g0810 | 719 | Pfam | MCM AAA-lid domain | 508 | 591 | IPR041562 | - | |
| Lele34g0810 | 719 | Pfam | MCM P-loop domain | 240 | 460 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
| Lele34g0810 | 719 | Coils | Coil | 599 | 622 | - | - | |
| Lele34g0810 | 719 | CDD | MCM3 | 255 | 593 | - | - | |
| Lele34g0810 | 719 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 262 | 606 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele34g0810 | Lele-ChrLele34 | 17707268 | 17712241 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele34g0810 | 1 | 527 | Core DNA Replication Machinery Family | AT5G46280 | 75.304 | 0.0 | 863 |