Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0808 ATGGCGAAGGAAGCTACGAGGTCGCGAAAGAGGATAGTGTTGAGGGTAAAATTCAATGAGGGGATGAAGAGATCTTCCCAGCTGACTAAGTCAGGGAAGAAACCCAAAGCCAAGCAAAAGAGGATTAACAAAAAGCTTGATGCTAAGAAACCAAAGAAACCCCCAACTGCTTTCTTCTACTTCTTGGAGGATTTTCGTAAAGAATTTCAAGAGCAGAATCCAGATGTCAAGTCAATGCGTGATATCGGCAAGGCTTGTGGAGAGAAGTGGAAAACAATGACTTATGAGGAGAAGGTTCAATACTATGATATAGCCACAGAAAAACGAGCAGAATTCGACAGAGCAATGATCGAATATAACAAGAAAATGGAAAGTGGAGAGCACGAAGAAACTGATGAAGAATCAGAGTTTGATGATGCATAA 423 0.4113 MAKEATRSRKRIVLRVKFNEGMKRSSQLTKSGKKPKAKQKRINKKLDAKKPKKPPTAFFYFLEDFRKEFQEQNPDVKSMRDIGKACGEKWKTMTYEEKVQYYDIATEKRAEFDRAMIEYNKKMESGEHEETDEESEFDDA 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0808 140 MobiDBLite consensus disorder prediction 121 140 - -
Lele34g0808 140 CDD HMGB-UBF_HMG-box 56 116 - -
Lele34g0808 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 24 136 IPR031061 -
Lele34g0808 140 SMART hmgende2 50 121 IPR009071 -
Lele34g0808 140 MobiDBLite consensus disorder prediction 23 51 - -
Lele34g0808 140 Gene3D High mobility group box domain 45 136 IPR036910 -
Lele34g0808 140 SUPERFAMILY HMG-box 44 125 IPR036910 -
Lele34g0808 140 Pfam HMG (high mobility group) box 51 120 IPR009071 -
Lele34g0808 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 51 120 IPR009071 -
Lele34g0808 140 MobiDBLite consensus disorder prediction 29 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0808 Lele-ChrLele34 17692242 17697108 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele34g0808 HMG_box 3.9e-18 CL0114