LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele34g0775	ATGGGGCGAGGAAGATTGGCGATGAAACTCATAGAGAAAGATAAATCCAGAAAAGCTACATTTCAGAAGAGAAAGAATGGAATCATGAAGAAAGCTCACGAGCTCTCTACACTATGTGGAGTTGACTGTTGCTTGATCGTCTATAGCCCTAACTCCATTAACGGCCTTCCTGAGATTTGGCCTCCAAATCACCCTAAGGTGAATGAAATCATTGAGAAGTATAGTGCGAAGATCACTGAGAAAGGTCCAAAGAAATACAATGTAATGGATTTCTTCAAAGACAGGAAGAACAAGGTGGAAGCCGAAGCATGCAAACTTCAGAAGGAGAGGCTCCGAAAACTCTATCCGACGTGGGATTTCTCTTTCGACAAACTCGGCGAAGAACAGCTGAGGATGTTCATCGCCATCTTGGATTTGAAGATCGAAGATTGCAAGGAGAGGATCAACATGTTGAAGAAGAAGCGCTTCATAGAAGAAAAACAACAACAACAACAAGGAACAGATCAATCCTCAGACAAATCATCAGCTTCAGTTTCAAACAGAAGCCACCTCAGTTTCATGCACAACAGCAACAACACTAAGTTGTCAACTCATCATCAAACCCTAGATTTTCCTCTCAAGTCTGAAGATCATCATCATCATCGTGTGATGCTTCATCCCTTTAATCCAAATCTAATGCCTTTGATGATGATCACAGAGAATGATTCAGCAGCAACACAGATCATTGATGCGTTTAGTCATCATTATGATCTGAGAGAATCTTGTCCTTCTTCGTGCTGTTACAATAATAATAATAATAACAATTACTATCCTTATCTGCAGAATAGTAATATTATGCAGTATCATCATCATGACGCAAATTTGCAGGTCCTTAATCCAGCAGCTTCTCTGATGATGGAAGAATTTCAGACCCATCCATCATCACTACGGGTACCAACATGA	942	0.4045	MGRGRLAMKLIEKDKSRKATFQKRKNGIMKKAHELSTLCGVDCCLIVYSPNSINGLPEIWPPNHPKVNEIIEKYSAKITEKGPKKYNVMDFFKDRKNKVEAEACKLQKERLRKLYPTWDFSFDKLGEEQLRMFIAILDLKIEDCKERINMLKKKRFIEEKQQQQQGTDQSSDKSSASVSNRSHLSFMHNSNNTKLSTHHQTLDFPLKSEDHHHHRVMLHPFNPNLMPLMMITENDSAATQIIDAFSHHYDLRESCPSSCCYNNNNNNNYYPYLQNSNIMQYHHHDANLQVLNPAASLMMEEFQTHPSSLRVPT	313

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele34g0775	313	ProSiteProfiles	MADS-box domain profile.	1	52	IPR002100	GO:0003677\|GO:0046983
	Lele34g0775	313	MobiDBLite	consensus disorder prediction	158	180	-	-
	Lele34g0775	313	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Lele34g0775	313	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Lele34g0775	313	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	3	182	-	-
	Lele34g0775	313	MobiDBLite	consensus disorder prediction	162	180	-	-
	Lele34g0775	313	Gene3D	-	14	99	IPR036879	GO:0003677\|GO:0046983
	Lele34g0775	313	SMART	madsneu2	1	62	IPR002100	GO:0003677\|GO:0046983
	Lele34g0775	313	Coils	Coil	134	154	-	-
	Lele34g0775	313	SUPERFAMILY	SRF-like	1	77	IPR036879	GO:0003677\|GO:0046983
	Lele34g0775	313	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	11	51	IPR002100	GO:0003677\|GO:0046983
	Lele34g0775	313	CDD	MADS	2	62	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele34g0775	Lele-ChrLele34	17458630	17460084	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele34g0775	1	147	Type I MADS-box Gene Family	AT5G55690	35.762	5.40e-23	94.4

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lele34g0775		SRF-TF	2.8e-20	No_clan