Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0745 ATGTGTGTGTGTGTGTGGAGCGTCTTGTATAGAAGTTCTGATAGAAGAAGGAAAAGAATTTCCCAGTTCCTGAGAACTGTGTTCCTGCTTGTAACTCTTTTATCGCTTTTGTGGTTTCCTTCCCCAGGTTTTTCGAGGTTGATTTCTGCAGACATGGCGTTCCCAAATAGTCAAGCCATGTTGGATTCATCATCTCCACAGAGAAAGATGGGAAGAGGGAAGATTGAGATCAAGAGGATCGAGAACACCACAAATCGCCAGGTTACTTTCTGTAAGCGCAGAAATGGTCTCCTCAAGAAGGCTTATGAGCTCTCTGTGCTTTGTGATGCTGAGGTCGCTCTCATCGTCTTCTCCACTCGTGGTCGCCTCTATGAATATGCTAATAACAGTGTGAAGGCAACAATAGAGAGGTACAAGAAAGCATGTTCAGATACTTCTGGTGCTGGTTCCACTTCTGAAGTTAATGCTCAGTATTATCAGCAAGAAGCTGCGAAACTGCGAGCTCAAATTAGTAGCCTGCGCAATAACAACAGGCAAATGATGGGGGAGACTTTGGCAGGTATGAGTGCTAGAGATCTCAAGAACTTGGAGGGTAAGTTAGAGAGAGGCATCAGCAGAATTCGTTCCAAAAAGAATGAGCTCCTCTTTGCTGAAATTGACTACATGCAGAAAAGGGAGGTAGACTTGCACAATAACAACCAGCTTCTTCGAGCTAAGATAGCAGAAAGTGAGAGAAACCAGCAGTTGCAGCAGCATAACATGAATGTGATGCCAGGAGGAGGAGGGACATCAAACTATGAAGGAATGCAGTCACCAACTGAGGATCAATATGACTCCCGAGGCTTCTTCCAAGTCACTGGTTTACAACCTACTCATCACTACGCTCCCCAAGACCACATCTCCCTCCAATTAGTGTATGCTCTCTCTCTCTCTCATATATATATATTGCCTTTGAGTTTTCCTTCATCTCCACCACAAATATGA 984 0.4441 MCVCVWSVLYRSSDRRRKRISQFLRTVFLLVTLLSLLWFPSPGFSRLISADMAFPNSQAMLDSSSPQRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKATIERYKKACSDTSGAGSTSEVNAQYYQQEAAKLRAQISSLRNNNRQMMGETLAGMSARDLKNLEGKLERGISRIRSKKNELLFAEIDYMQKREVDLHNNNQLLRAKIAESERNQQLQQHNMNVMPGGGGTSNYEGMQSPTEDQYDSRGFFQVTGLQPTHHYAPQDHISLQLVYALSLSHIYILPLSFPSSPPQI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0745 327 Pfam K-box region 153 240 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele34g0745 327 PANTHER SERUM RESPONSE FACTOR HOMOLOG 70 250 - -
Lele34g0745 327 SMART madsneu2 70 129 IPR002100 GO:0003677|GO:0046983
Lele34g0745 327 FunFam agamous-like MADS-box protein AGL11 82 165 - -
Lele34g0745 327 CDD MADS_MEF2_like 71 144 IPR033896 GO:0000977|GO:0045944
Lele34g0745 327 ProSiteProfiles MADS-box domain profile. 70 130 IPR002100 GO:0003677|GO:0046983
Lele34g0745 327 Gene3D - 82 148 IPR036879 GO:0003677|GO:0046983
Lele34g0745 327 Coils Coil 193 213 - -
Lele34g0745 327 Coils Coil 156 183 - -
Lele34g0745 327 ProSiteProfiles K-box domain profile. 156 246 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele34g0745 327 SUPERFAMILY SRF-like 71 142 IPR036879 GO:0003677|GO:0046983
Lele34g0745 327 PRINTS MADS domain signature 72 92 IPR002100 GO:0003677|GO:0046983
Lele34g0745 327 PRINTS MADS domain signature 107 128 IPR002100 GO:0003677|GO:0046983
Lele34g0745 327 PRINTS MADS domain signature 92 107 IPR002100 GO:0003677|GO:0046983
Lele34g0745 327 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 79 126 IPR002100 GO:0003677|GO:0046983
Lele34g0745 327 ProSitePatterns MADS-box domain signature. 72 126 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0745 Lele-ChrLele34 17147406 17153506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0745 68 305 MADS-box Gene Family AT3G58780 63.180 2.72e-102 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele34g0745 K-box 1.3e-26 No_clan