Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0729 ATGGCTGCGTCTTCTTTAACTAATGCGACCCGTGAGGTTGTTCTGAACGTCAATGGAAAATCCAATTACAAAGATTCATGCATCTACGACGACATCATCCCTTTCTTGCAGAAGTTGGTGGCGGAATTCGTGGGGACATTCTTTCTGATGTTTGCAGGGCAAGCATCAGAGGTGGTGAACCAGGGCTACGACAACCAACTAGCGCTTCCTGGGATTGCCGTAGTTTGGGGTCTTGCCGTTTTGATTCTTGTCTACGCCGTCAGTCACATCTCTGGCGCCCATTTCAATCCTGCCGTCACTATCGCTTTTGCTTCTACCGGACGATTCCCCCTCATACAGGTACCAGCTTATATATCAGCGCAGGTTCTGGCATCGATTCTAGCGAGTGGGACTCTGAGGCTTATATTCACAGGAAGGCATGACCACTTCGCAGGAACACTATTATCAGGGACGCATCTGCAAGGTTTTGTTGTTGAGTTCATCACCACCTTCTACATCATGCTTGTTAAGTATTCTACCAGTGGTCTCGCCACTGATAACAAGGCCATTACTCAGGTGGCTGGTCTGGCGGTAGGGTGTACCATGTTACTTAATGTGATGTTTGCCGGGCCAGTGACCGGAGCATCGATGAACCCGGCGAGAAGCTTAGGGCCAGCGATTGTGTGGCACAAGTACAATGGATTATGGGTGTACATGACAGCGCCGGTGGCCGGAGCAGTGGCGGGGGCATGGGTGTATAACATCATGATTTATACAAAAAAGCCAATAAGAGATATCACAAAGACTGCTTCTTTCAACGAAGTTGCTTCCTTCAGCGATATCACAGCAAAGACTGCACCTTTCAACAAAGTTGCTTCCTTCAACATAGCTTCAAACATCTGTGATGATTCAAGAATTTCTGAATCCTCCCAGGCAAATTTAATTCGTCAGTATTAG 936 0.4765 MAASSLTNATREVVLNVNGKSNYKDSCIYDDIIPFLQKLVAEFVGTFFLMFAGQASEVVNQGYDNQLALPGIAVVWGLAVLILVYAVSHISGAHFNPAVTIAFASTGRFPLIQVPAYISAQVLASILASGTLRLIFTGRHDHFAGTLLSGTHLQGFVVEFITTFYIMLVKYSTSGLATDNKAITQVAGLAVGCTMLLNVMFAGPVTGASMNPARSLGPAIVWHKYNGLWVYMTAPVAGAVAGAWVYNIMIYTKKPIRDITKTASFNEVASFSDITAKTAPFNKVASFNIASNICDDSRISESSQANLIRQY 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0729 311 PANTHER AQUAPORIN NIP2-1 27 265 IPR034294 -
Lele34g0729 311 TIGRFAM MIP: MIP family channel proteins 41 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 PRINTS Major intrinsic protein family signature 37 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 PRINTS Major intrinsic protein family signature 76 100 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 PRINTS Major intrinsic protein family signature 113 132 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 Gene3D Glycerol uptake facilitator protein. 6 261 IPR023271 -
Lele34g0729 311 ProSitePatterns MIP family signature. 94 102 IPR022357 -
Lele34g0729 311 CDD MIP 37 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0729 311 SUPERFAMILY Aquaporin-like 33 257 IPR023271 -
Lele34g0729 311 Pfam Major intrinsic protein 34 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0729 Lele-ChrLele34 16998128 17000475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0729 20 278 Major Intrinsic Protein MIP AT5G37820 48.689 5.22e-83 251