LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele34g0646	ATGGCGTCGTCATCGTCTTCCAAAACAGAGCTTCTTCCTTTCAACCAGGATGACTCTCAAGACATGGTCATCTACCATGTCCTCTCTGAAGCCAACGCTCTTCCACCTACTTCTCCCACTTCTATTTCTGCACCAGTCCTTGGCCTCCATCAGGCCACCACCAGGACCGTCAAGAAGCACTACCGGGGAGTCAGGCGGCGGCCGTGGGGGAAGTATGCAGCAGAGATCCGGGACTCGGCTCGCCACGGGGCTAGGGTTTGGTTGGGAACGTTTGAGACCGCAGAAGAAGCTGCCTTGGCTTATGACAGAGCAGCTTTCAGAATGAGAGGTTCTAAGGCTCTGCTTAATTTCCCTCCCGACCTTGTAGCTCCTTCTTCTTCTTCTATTCTCAGCCCAGGAAGATTGAATGGCAAGGCTTCTTCCGGTTCTGATTCAAGTGCTCTAATTAGCTCATGTGCAAGTTCTGTTGATTCCAGCTAG	480	0.5229	MASSSSSKTELLPFNQDDSQDMVIYHVLSEANALPPTSPTSISAPVLGLHQATTRTVKKHYRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGSKALLNFPPDLVAPSSSSILSPGRLNGKASSGSDSSALISSCASSVDSS	159

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele34g0646	159	FunFam	Ethylene-responsive transcription factor 2	59	119	-	-
	Lele34g0646	159	PRINTS	Ethylene responsive element binding protein signature	61	72	IPR001471	GO:0003700\|GO:0006355
	Lele34g0646	159	PRINTS	Ethylene responsive element binding protein signature	84	100	IPR001471	GO:0003700\|GO:0006355
	Lele34g0646	159	MobiDBLite	consensus disorder prediction	126	159	-	-
	Lele34g0646	159	PANTHER	DNA-BINDING DOMAIN	52	133	IPR044808	GO:0003700\|GO:0009873
	Lele34g0646	159	CDD	AP2	59	120	IPR001471	GO:0003700\|GO:0006355
	Lele34g0646	159	SMART	rav1_2	60	124	IPR001471	GO:0003700\|GO:0006355
	Lele34g0646	159	Gene3D	AP2/ERF domain	59	119	IPR036955	GO:0003700\|GO:0006355
	Lele34g0646	159	SUPERFAMILY	DNA-binding domain	60	119	IPR016177	GO:0003677
	Lele34g0646	159	Pfam	AP2 domain	60	110	IPR001471	GO:0003700\|GO:0006355
	Lele34g0646	159	ProSiteProfiles	AP2/ERF domain profile.	60	118	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele34g0646	Lele-ChrLele34	16046410	16046889	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele34g0646	12	129	AP2-EREBP Transcription Factor Family	AT3G23240	54.237	8.52e-41	134

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele34g0646		AP2	1.1e-15	CL0081