Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0603 ATGTCAGCCTTCACTTCTCCGATCACCGCCGATGACGACGACCCTTCAGATAGTCACTTCTACGGCCCCGACGCCGATGCCATTGCGTCCGACAAGCCCAATAAGGATCAGAAAGTAGGAGATGCTAGAAAGAGTACATTGGAGCAGTTTCTCCTGATTCATCTCAAAGGTTTTTGCTACAAGAAAGAGAACACAATTGTGTTGGGCCATGTGCACCTTATTTCGAGTTCAGCCATGAGGTCTGTGAGGCCAGAAGGGAACTTGATATCAGTTTTACCTGCAGTAGGAAACCTTGAAGTGACATCACCATCTTATTTGCCTCTTATGGAAGGGAATGCAGCCATGGCTAAAGATATAAGTTCTGGGCCTTCCAGGTCGTTTACAGATTTTGGAAAAGATGGGACTATTGACCTGCGGAGAGATTGCATTGTTGAGAAGGCTAGTGGTGATCAAAATCATATAAAGCGTATTAGGCTTTTGAACATGCAATCAGGAGATACTATGAGCCCAACGACATCAAGAGATCTGTCTCCCTGTGCTGAGATTAAAGTTGGAAATGAGCATCATGAAAACATATGTGCTTTTTATGCCAAAGGATGGTGCATCAGGGGTAATTCTTGTAGGTTTGTTAATATAAAAGATCCTGAAAATAAATCAGGCCAGCAGACTGAAGCGGAATTTGTTACTCAAAATTGGAAGAGAGAAGTGCAACCAGAGGAAGGTATTGGAGATGATGTTAAGAGATCAAGGATTCCTTTTACTCAAGTTCCATTGGCTGCTACACAAGAAACAACATCTCTATATTCATCTGAATTTTCCTTCAACCCAATAATCCAGAAAGAAGTAGGCCCAAGCCGGCACCCAGACAAAAGTTGGTCTGTCCCTTCTTTCCCTTCCTGTCTAACCCATGCAGAGGGAATGGCAACTACTCAAGTTGAGAGTCATTCACCTAATTTAAACATGGCTGCTCACCTTCCAACTATATGTATGTCACTGTCCCACCATATTCCTTCCCGATCAGGATGTTCATTGTCTTTTAGTGGATCCTTAAGTGAAAATTCTATAGATTCTCAACAACTCTTGAACAGTGGCATGGCGTATCATGACAGCAGATCCGCTTTGTCTGGTTCAGAATGGGAAGGTTTGGCTCCAAGTAGTTCATTTGGGGTTCCACCACACCCAACCGGATGTAAATTAAAGTTCTCTTCATATGATTGGGAGCCATCTGTACCTTTCAAACCATCTTTTTTTATTACTCCTTCAAGTAGATCATCTGTAGAAGATCAAAAAGACCCTTTTCACAGTAGTGTGGAGATATCCAATATAGGGGATGGATCCTTGAAAGCTTTCATTTTATCTCAAAGGTCATCCATTCAGACTTCATCTCAGGTTCCTACAAATGGTGAGTCTGCTGAAGCTGCAAATCGGGGATTAGATCTTCATGGTGCCAAAAGTTCTGTATCTTCTCATAATAGATGTAATAAAACTGAGCCAGAGAAGAGTTGTGTTCCTCAGGTAAAAAGTTTTGTTACAACTGAAATAGATAGAATCTCAGCAAGGGTTGGCATGGGACTCAATACCTTTGAAGATGTTAACAATATAGGAAAAGAACAAACTGAGCGTGATGCTAGACCTCAAGTTGAAGTAACAGAGTACAAAAAACAAAGAGTAGATAGGGATAAGAAAAACAGTGAAATGGATAATGATCTTCAGAAGGATGTTGGTGTGCAAATAGAAACAATGGAACTGAGAAATTTCCGTTTTGCACTTGTTGATCATGTGAAAGAGATTTTAAGACCAGTTTGGCTCGAGGGTCACCTCGGCAAGGATGAGCATAACATGATTGTTAAAAAATCAGTTGACAAGATTATTAGAACCTTACAGCCCGAGCAAATTCCACCAAATGAGGATTATATCAAGAAGTACCTTTCTTTTTGTCAGGTGAAAATTGCAAATCTGGTCAAGTTCGCTAGCGGAACTGATTATTTCATTTATTGCTATGGTTTGGGTATTCTTCTCAAATCTCAATCTTAG 2034 0.4086 MSAFTSPITADDDDPSDSHFYGPDADAIASDKPNKDQKVGDARKSTLEQFLLIHLKGFCYKKENTIVLGHVHLISSSAMRSVRPEGNLISVLPAVGNLEVTSPSYLPLMEGNAAMAKDISSGPSRSFTDFGKDGTIDLRRDCIVEKASGDQNHIKRIRLLNMQSGDTMSPTTSRDLSPCAEIKVGNEHHENICAFYAKGWCIRGNSCRFVNIKDPENKSGQQTEAEFVTQNWKREVQPEEGIGDDVKRSRIPFTQVPLAATQETTSLYSSEFSFNPIIQKEVGPSRHPDKSWSVPSFPSCLTHAEGMATTQVESHSPNLNMAAHLPTICMSLSHHIPSRSGCSLSFSGSLSENSIDSQQLLNSGMAYHDSRSALSGSEWEGLAPSSSFGVPPHPTGCKLKFSSYDWEPSVPFKPSFFITPSSRSSVEDQKDPFHSSVEISNIGDGSLKAFILSQRSSIQTSSQVPTNGESAEAANRGLDLHGAKSSVSSHNRCNKTEPEKSCVPQVKSFVTTEIDRISARVGMGLNTFEDVNNIGKEQTERDARPQVEVTEYKKQRVDRDKKNSEMDNDLQKDVGVQIETMELRNFRFALVDHVKEILRPVWLEGHLGKDEHNMIVKKSVDKIIRTLQPEQIPPNEDYIKKYLSFCQVKIANLVKFASGTDYFIYCYGLGILLKSQS 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0603 677 SUPERFAMILY CCCH zinc finger 187 210 IPR036855 GO:0046872
Lele34g0603 677 MobiDBLite consensus disorder prediction 1 41 - -
Lele34g0603 677 ProSiteProfiles Zinc finger C3H1-type profile. 192 214 IPR000571 GO:0046872
Lele34g0603 677 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 171 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0603 Lele-ChrLele34 15589444 15594537 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele34g0603 None None None