Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0590 ATGTACCTGGTTGTGCGATCTGGATACAGGAATATTTTACACAAGATGAGTACAGATTCTGTTGGGGGCCGTTCTCCTGGAAGTCATCAGCGAAGGGATGCTGTTTTGGACTTGGATCTTAATAGGGCTCCACCTGGTGCTAATCAGGAGCAAGAGGGACCTTCAATTCTATCAGAATTTCATGTAGTTCAAGCTGCCCAGCAACCACAGTTTATGCAGCCTATTGATGTGGAGGCTATTGATGATGATGTTATTGAATCTACACGAAGTGCTTTTGTTGAGAGTGGAGGAAATATAAAGTCAGCTGAACCTCCAAAAGAACCTGTGTTTAATTGTCCAATATGTAGAAAACCATTTGTGGAAGAAATGTTGACAAGGTGTGGTCATATCTTTTGTAAGAAATGCATTAAGGCTGCTATAAAAGCACAAGGTAAATGCCCTACATGTGGCCAAAAGATTACTGCAAGAGGCCTTATAAGGGTGTTTCTACCATCAACTAGTACTTCTCCTTAA 513 0.4133 MYLVVRSGYRNILHKMSTDSVGGRSPGSHQRRDAVLDLDLNRAPPGANQEQEGPSILSEFHVVQAAQQPQFMQPIDVEAIDDDVIESTRSAFVESGGNIKSAEPPKEPVFNCPICRKPFVEEMLTRCGHIFCKKCIKAAIKAQGKCPTCGQKITARGLIRVFLPSTSTSP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0590 170 SMART ring_2 112 149 IPR001841 -
Lele34g0590 170 ProSiteProfiles Zinc finger RING-type profile. 112 149 IPR001841 -
Lele34g0590 170 SUPERFAMILY RING/U-box 107 162 - -
Lele34g0590 170 PANTHER ELFLESS, ISOFORM B 16 94 - -
Lele34g0590 170 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 167 IPR013083 -
Lele34g0590 170 ProSitePatterns Zinc finger RING-type signature. 127 136 IPR017907 -
Lele34g0590 170 Pfam Zinc finger, C3HC4 type (RING finger) 111 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0590 Lele-ChrLele34 15380189 15383012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0590 16 166 C3H Transcription Factor Family AT5G48655 39.048 4.33e-31 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele34g0590 zf-C3HC4_2 2.5e-09 CL0229