Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0575 ATGGCTGAGACCTCTGCAACTAAAGGAACCCATGAGGTTGTTCTTAATGTCAATGACAAATCTAATGAAGACTCCATCATCTCTGTCTCTGTCCCTTTCTTACAGAAGTTGGTGGCAGAGTTGGTGGGGACATACTTTCTGATATTTGTAGGGGGAGCATCAATAGTGGTGAACAATAACAACAACAACATCGTAACGCTTCCTGGGATTGCCATCGTTTGGGGTCTTCTGGTTATGGCCCTTGTCTACTCTCTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCTGTCACTCTCGCTTTTGCTTCCACTAAACGATTTCCCCTCAAACAGGTACCAGCTTATATATTAATTCAGGTTCTAGGATCCACTCTTGCAAGTGTGACTCTGAGACTTGTTTTCACAGGAAAACATGACCAATTCATTGGAACATTATTATCTGGGTCATATCTTCAGGGCTTTGTGGTTGAATTCTTGATCACCTTCTACCTCATGTTTGTCATCTCGGGTGTGGCAACTGATAGCAGAGCGATTGGTGAGCTAGCTGGGATCGTCGTAGGGGCAACCGTGTTGCTTAATGTGTTGGCTACCGGGCCGGTAACTGGATCGTCAATGAACCCGGCAAGAACCCTAGGGCCGGCGATCGTGTGGCATGAGTACAGAGGAATATGGGTGTACATGATAGCACCGGTGATGGGAGCAGTAGCAGGGGCATGGGTGTATAACATCGTAAGGTATACAAACAAGCCAATACATGAGATCACAAAGAGTAGTACTTCTTTTCTCAAAGCTTCATCAAGCTGTTGTTGTGGTGCCTCCAAGTGA 825 0.4606 MAETSATKGTHEVVLNVNDKSNEDSIISVSVPFLQKLVAELVGTYFLIFVGGASIVVNNNNNNIVTLPGIAIVWGLLVMALVYSLGHISGAHFNPAVTLAFASTKRFPLKQVPAYILIQVLGSTLASVTLRLVFTGKHDQFIGTLLSGSYLQGFVVEFLITFYLMFVISGVATDSRAIGELAGIVVGATVLLNVLATGPVTGSSMNPARTLGPAIVWHEYRGIWVYMIAPVMGAVAGAWVYNIVRYTNKPIHEITKSSTSFLKASSSCCCGASK 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0575 274 Pfam Major intrinsic protein 30 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 CDD MIP 35 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 PRINTS Major intrinsic protein family signature 187 209 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 PRINTS Major intrinsic protein family signature 156 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 PRINTS Major intrinsic protein family signature 224 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 PANTHER AQUAPORIN NIP2-1 21 260 IPR034294 -
Lele34g0575 274 TIGRFAM MIP: MIP family channel proteins 39 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele34g0575 274 Gene3D Glycerol uptake facilitator protein. 5 257 IPR023271 -
Lele34g0575 274 SUPERFAMILY Aquaporin-like 28 256 IPR023271 -
Lele34g0575 274 ProSitePatterns MIP family signature. 92 100 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0575 Lele-ChrLele34 14971762 14974067 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0575 35 273 Major Intrinsic Protein MIP AT5G37810 55.230 2.12e-92 273