Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0573 ATGATTGATCAGTATGAGCTGTTCAGAAGCAGTATATTGTCCTTACTCTTAACCTTAATTTTACTTGGTTATGTGCTTCTACTTCTTGCAATCTTAATTTTACTTGGTTATGTGCTTCTACTTCTTGCAATTCTCTGTATTGATCTGGTTTCATCTCATGTTTATATATATATATATGTTCCAGTGGTTAAACTTGTGAATAAGTGTTCCAAATTTATGGCCTATGGGCACCGCCTATCCCAGGAATGGAAACCCAGCAGCCCTAGAGAGGATGAAAACTCAACTAATGGTTGTTTCGATTGCAACATCTGCTTAGACTTTGCACGTGAACCGGTAGTCACTCACTGTGGCCACCTGTACTGCTGGCCCTGCATCTACAAGTGGCTTCATCTCCAAACTGATTCCTTAACATCTGATGAGCAACCTCAATGCCCAGTTTGCAAGGCTTGTATATCCTCTGCTACGATCATTCCTCTCTATGGTCGAGGGCAGGCCTCACTGGCTCAAAGTGAGCACCACGATGAGAAGGCACCGGATCCGGACATTTCTATACCACCAAGACCACCTGCTGCCAGTGTTGAAGCTCCATTGCCGTCATCATCACCATCTTCTCCTCATAACCCTTATCAGAATCAGCATTTTGTTACTCCTTCTCTAGACCATGAGAATGCTTCCCCACAGATGGTTAATCTTGGTGCTGCTGCCTTGATGCCGGGTTTTCGTCATCCTTTGCATGGGATGTTTGGGGAGATGGTGTATGCTAGAGTGTTTGGCAACCCAGAAAATATATACGAATATCGGAATTCTTATCATGTTGGGGGAGCTAACAGCCCCAGATTGAGAAGGCAGGAGATTCAGGCAGACAAATCATTGAAGAGAGTATCAATTTTCCTGTGTTGCTGCCTTGTTTTGTGTCTTCTAGTGTTTTGA 930 0.4376 MIDQYELFRSSILSLLLTLILLGYVLLLLAILILLGYVLLLLAILCIDLVSSHVYIYIYVPVVKLVNKCSKFMAYGHRLSQEWKPSSPREDENSTNGCFDCNICLDFAREPVVTHCGHLYCWPCIYKWLHLQTDSLTSDEQPQCPVCKACISSATIIPLYGRGQASLAQSEHHDEKAPDPDISIPPRPPAASVEAPLPSSSPSSPHNPYQNQHFVTPSLDHENASPQMVNLGAAALMPGFRHPLHGMFGEMVYARVFGNPENIYEYRNSYHVGGANSPRLRRQEIQADKSLKRVSIFLCCCLVLCLLVF 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0573 309 SMART ring_2 101 147 IPR001841 -
Lele34g0573 309 CDD RING-HC_AtRMA_like 99 149 - -
Lele34g0573 309 SUPERFAMILY RING/U-box 96 160 - -
Lele34g0573 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 179 IPR013083 -
Lele34g0573 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 79 306 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele34g0573 309 Pfam Zinc finger, C3HC4 type (RING finger) 101 147 IPR018957 GO:0046872
Lele34g0573 309 MobiDBLite consensus disorder prediction 196 217 - -
Lele34g0573 309 MobiDBLite consensus disorder prediction 167 217 - -
Lele34g0573 309 ProSiteProfiles Zinc finger RING-type profile. 101 148 IPR001841 -
Lele34g0573 309 ProSitePatterns Zinc finger RING-type signature. 116 125 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0573 Lele-ChrLele34 14961385 14963840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0573 86 295 C3H Transcription Factor Family AT4G27470 39.352 3.56e-45 152