Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0572 ATGGCGGGTCGGTTCGGTTCGACATCCATGATCGTCGTGTGCTCGCCTACGCCGGACCTCGCCTTCACCAATCTTGCCTTCTGTTCCCCTTCTGATCTTCAGAAGTTCGCTGTCTCTGGTTACAGAAACCTCTTCCTGGCTTTGATTGGCGATTTCTTTGTTGTTTCTCTTGCATATCCTTTTCGAATTTTCAAAAATTCAATCACAATTTTACGTCTTCCATTTATGTATTGGCTGTTAACGGAAAATTGGATTGAACAACTAGGCCTAGCATCAAGCGTAAGTAGTGGCCATATTGCACTTAACTTCATTCAACGTCAGTGTGTCAAAGTTTCTGCTGCTGAATCCATATCTGTGAGCAGATTCTCCCCACCAGAGATCTTCAACCTTGCGGTGTTAACAGTTGAGCTGGACTTCTTTGGAAGGGGAAGCAGAAGTGAACAAATTGATGCTGTTCTTCTGTCCAAGCAACTTAAAGAGAGATTTATAAATCAGGTAGCATCTTTTAGTAGGTTAATTATGCCTGTTAGTTGGCTAGCCTTGATTATCAATCAGCGTGAGGCTGCCACTAGCAACATTTTTAAGCAGAAAGAGAATCTTCAGTCTCTGGGTATTGGAGGTCTGAGTGCGGAATTTGAAGATATATTTCGAAGAGCTTTTGCTTCTCGTGTTTTCCCTTCTCATGTGACATCCAAGCTAGGTATCAAGCATGTGAAGGGAATGCTGCTTTATGGGCCTCCTGGTACTGGAAAAACTCTAATGGCACGTCAAATAGGAAAAATTTTGAATGGAAAGGAGCCGAAGATTGTCAATGGCCCTGAAGTCTTGAGTAAATTTGTTGGTGAAACTGAAAAGAATGTGAGGGACCTCTTTGCTGATGCTGAACAAGATCAGAGGACCAAAGGGGATGAAAGTGATTTGCATGTCATCATTTTTGATGAAATTGATGCTATTTGTAAGTCAAGAGGTTCAACTAGGGATGGTACTGGAGTTCATGATAGTATTGTGAACCAACTTCTTACTAAGATAGATGGTGTGGAATCACTGAATGATGTTTTGCTTATTGGAATGACCAACAGAAAAGACATGCTTGATGAAGCTCTTTTAAGACCGGGCCGACTAGAAGTACAGATTGAGATAAGCCTTCCTGATGAAAATGGTCGATTCCAAATTCTCCAAATCCATACTAACAAGATGAAAGAGAATTCTTTCCTGGCTCCTGATGTGAATCTTCAAGAGCTTGCTGCTCGAACAAAAAACTACACTGGTGCAGAACTTGAAGGTGTGGTGAAAAGTGCGGTCTCATTTGCTTTAAATAGACAACTAAGTCTTGATGATCTCACCAAGCAAGTTGAAGAAGAGAATATTAATGTAACGATGGAGGACTTTTTGAATGCACTGCACGAAGTTATTCCTGCATTTGGAGCTTCCACTGATGACCTTGAAAGATGCAGGCTCCATGGCATGGTTGACTGCGGTGATCGACATAAGCACATTTATGAAAGGGCTATGTTACTAGCAGAGCAAGTGAAAGTGAGTAGAGGAAGCCCACTCATCACTTGTCTTCTTGAGGGTACTAGTGGCAGTGGCAAAACAGCACTTGCAGCTACTGTTGGTATTGACAGTGATTTCCCATATGTGAAGATAGTTTCTGCTGAATCAATGATTGGACTACATGAGAGCACTAAATGTGCACAGATTATCAAGGTATTCGAGGATGCTTACAAGTCACCATTGAGTGTCATTGTTCTTGATGACATTGAGAGGTTATTGGAGTATGTGCCCATTGGTCCACGGTTTTCAAATTTGATTTCACAGACACTATTTGTCTTGCTTAAACGGCTTCCTCCAAAGGTATCTATTTATCCTTGGCTTACTACAAGGGGAGGAAAGGGATGCCTAAGAAGATGA 1911 0.4181 MAGRFGSTSMIVVCSPTPDLAFTNLAFCSPSDLQKFAVSGYRNLFLALIGDFFVVSLAYPFRIFKNSITILRLPFMYWLLTENWIEQLGLASSVSSGHIALNFIQRQCVKVSAAESISVSRFSPPEIFNLAVLTVELDFFGRGSRSEQIDAVLLSKQLKERFINQVASFSRLIMPVSWLALIINQREAATSNIFKQKENLQSLGIGGLSAEFEDIFRRAFASRVFPSHVTSKLGIKHVKGMLLYGPPGTGKTLMARQIGKILNGKEPKIVNGPEVLSKFVGETEKNVRDLFADAEQDQRTKGDESDLHVIIFDEIDAICKSRGSTRDGTGVHDSIVNQLLTKIDGVESLNDVLLIGMTNRKDMLDEALLRPGRLEVQIEISLPDENGRFQILQIHTNKMKENSFLAPDVNLQELAARTKNYTGAELEGVVKSAVSFALNRQLSLDDLTKQVEEENINVTMEDFLNALHEVIPAFGASTDDLERCRLHGMVDCGDRHKHIYERAMLLAEQVKVSRGSPLITCLLEGTSGSGKTALAATVGIDSDFPYVKIVSAESMIGLHESTKCAQIIKVFEDAYKSPLSVIVLDDIERLLEYVPIGPRFSNLISQTLFVLLKRLPPKVSIYPWLTTRGGKGCLRR 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0572 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 480 IPR027417 -
Lele34g0572 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 618 IPR027417 -
Lele34g0572 636 Pfam ATPase family associated with various cellular activities (AAA) 241 381 IPR003959 GO:0005524|GO:0016887
Lele34g0572 636 Pfam ATPase family associated with various cellular activities (AAA) 522 591 IPR003959 GO:0005524|GO:0016887
Lele34g0572 636 ProSitePatterns AAA-protein family signature. 352 370 IPR003960 GO:0005524|GO:0016887
Lele34g0572 636 Gene3D - 479 627 IPR027417 -
Lele34g0572 636 CDD AAA 239 382 - -
Lele34g0572 636 Pfam AAA+ lid domain 408 463 IPR041569 -
Lele34g0572 636 FunFam vesicle-fusing ATPase isoform X1 479 627 - -
Lele34g0572 636 FunFam Vesicular-fusion ATPase SEC18 193 383 - -
Lele34g0572 636 FunFam Vesicle-fusing ATPase 383 470 - -
Lele34g0572 636 Gene3D - 6 122 - -
Lele34g0572 636 CDD AAA 522 590 - -
Lele34g0572 636 Gene3D - 188 382 IPR027417 -
Lele34g0572 636 SMART AAA_5 237 384 IPR003593 -
Lele34g0572 636 SMART AAA_5 517 634 IPR003593 -
Lele34g0572 636 Gene3D - 383 470 - -
Lele34g0572 636 PANTHER VESICULAR-FUSION PROTEIN NSF 182 618 IPR039812 GO:0016887|GO:0035494
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0572 Lele-ChrLele34 14927451 14949766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0572 232 448 Calmodulin-binding Proteins AT3G56690 39.367 2.84e-40 156