Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0558 ATGGCTTCGTCTCAAGTCGATTTTGCTTCATCAACCTCGCCATTTGGTTGCATCAGTACGAGGAATCGTCGTAGTCTTCATCATCGAGTCACACAAGCCAAAGATTTATTCAACCATTTCATCAGAGACCACCTTAACAACAACAATAAGGCCAAGAACAACCTTGGAACCCTACGTTTTGCGTCCAACAACAAAAGAGATCAACAAGATGAGTCGTCGTCGTTGTCGGTGAGCCCTAACCATGAAGGACCATCACCGTCTTCGTCATCGTCGTCCCCCCCTTTAAGAAAACGAAAACCACCACCTATTTCTGTTCCCTCGGATTTCTCATCACCCTGTGACGATGATGTCCAAAATCTTGGAGCTTCATCACTGGTTCAAATGTGGGAAAAGAGACTAACCCAATCATCATCAAACACAACGACCAAGTCGTCGTCAACTCCGAAATCTAGCCCTAGCGCAACATCTTCATCATCATCATTATCACCACAAAGTTCATCATCAGAAGAAGCAGTTTTATCATTATCAAAAAAAGAAGCCGATTTATCACCACAAGGCCAGATTCTGAATCATGAGCAAGATCATCGTCATCATCATCAACTGAGGGTGGCTGATATTATCAAAAGACTAACGGCGACGAGTGAAGAGACTGTGGATAACAATAATAATAATAATCAAGCTCAAGATCATCAAAATTATTATTGTGTGGGATCTCCAGAACAACAATCATTATTAGAGAACAATGTTAGAAGAAGCTTTGTGATAAATTCACCAAGAATTAGAGGAAGACAAGCCTTTAATGATTTGCTTATGCAAATGGAACGTGATCGTCATCGCGAGCTCAATAATCTTGCAGATCGTGCGGCTGTTTCCAAGTTTTCTCATAGAGGTCGGATTCAGGCCTTGCTTCGACTAAGACTAATGCAACCTGGCATAGTGGTTAAGGATCCACGTGACTTGCCATCATCAACAACATCACAACTGATTAAGCAAAAGCAATTACCTCAAGGATCTGTAATTATGCGCCTAAGGGAAAGATTTAGCACAGGAATAAAAAATGGATCTGCATCATCAATTGAAGCAGAAGTAGCTCATGAACCAAGAACTCCAAATAAAGAACAAGAAAACAAAGTCTCATCACCGATATATAATCCTCCAAACCCTACCCAAAACCCTGCATTGTCCCATACAGATCATAATAACAAAGAAGAAGAAGAAGAAAAGGAAGAGGAAGAAGCACCTCCATTCTCAGATGTCTCGGTACCGTGCTCGGAGCAGGCTCAAAATGTAGAGACAAGTTCTTCTTCCATGGCTGATCTGAATGTAGAATCAGAGTTATCACAGACTGTTGAAGGAAGAGAAGAGAAGCATAATAACAATGCTTCTGATGAAACCAATTATGATGAGATGGAAGAAGAAGGAGGAAGTGATGAAGATGAGTATGGCGAGAGAATGTATGATGAGACAGAAGAAGAAGAGGTAGAGAGAAGTGATGAGCAGATTTATGGTGAAGATAATAATTTTGATTGGATTAGTCAGATTTCTAAACCTAAGAGCTATTGGGAAGATCTTAGGCAAGCTTGGTATAAGGAGATGCTTGATAATGAATCACAAAATAATGATGATATCTGCAAACTCCTTCAAAGAAGAACGGTGTCAAATTTTCTATGTAGTGACTTCCGAGAAAAAATGGACAGGTTAATGGAGTCTCATAAAGGAACACAAACAAACCTATTGGCTAGTCCAGGAGATGACGATGAAGTCAACCACCATGGGGAAATAGGGCAACTGATAGGATTTTTACAGAAAAAAATGAATAGTAATCCTACAAAAGAAGAAGAAGAAGAAGAAGATGAAGATGATGAGGAGGAGGAGGAGAAGGAGGAGGAGGAAGAAGAAGAAGAAGAGAAAGAGGAAGAAGAAGAAGAGGAGATTCTGATAAGTGGTTCATATAATGAAGAGAGTGACTCAATGAACCATTCATCACCATCACCATCACAATGGCGTTACGGTGATGATTCTGCATCCTTAACACAACCTTCTCAATCTCCATCTTTCTTTCACAATACTCAACGAAAGTACTCTTCGCCCACCAATCCTCCTCCTTCTATTGAAATGGAACTGATATATGATCTGAGAGGGCATATGAAGCAGCTGTATCAAGAGATGTTTGAGTTAAGGAAATCAATAAGAAGCTGCATAGATATGCAGATGAACTTACAAAAATCACTAAATCGAGAGAATCATACAGCTAAGGGAAAGAAGTCCCATGATAGAGTATTGAAGAAAGGAAACTGTTGTATCTGCTCAAACATGAAAGCTGATTCACTTTTCTACAGATGTGGCCATATGTGCACGTGCCTAAAATGTGCCAATGAGTTACAATCGAAGAAAGGGATGTGTCCAATCTGTGAGGCTCCAATAGTTGATGTTGTTCGAGTTTATGTTGATGCTTAG 2457 0.4009 MASSQVDFASSTSPFGCISTRNRRSLHHRVTQAKDLFNHFIRDHLNNNNKAKNNLGTLRFASNNKRDQQDESSSLSVSPNHEGPSPSSSSSSPPLRKRKPPPISVPSDFSSPCDDDVQNLGASSLVQMWEKRLTQSSSNTTTKSSSTPKSSPSATSSSSSLSPQSSSSEEAVLSLSKKEADLSPQGQILNHEQDHRHHHQLRVADIIKRLTATSEETVDNNNNNNQAQDHQNYYCVGSPEQQSLLENNVRRSFVINSPRIRGRQAFNDLLMQMERDRHRELNNLADRAAVSKFSHRGRIQALLRLRLMQPGIVVKDPRDLPSSTTSQLIKQKQLPQGSVIMRLRERFSTGIKNGSASSIEAEVAHEPRTPNKEQENKVSSPIYNPPNPTQNPALSHTDHNNKEEEEEKEEEEAPPFSDVSVPCSEQAQNVETSSSSMADLNVESELSQTVEGREEKHNNNASDETNYDEMEEEGGSDEDEYGERMYDETEEEEVERSDEQIYGEDNNFDWISQISKPKSYWEDLRQAWYKEMLDNESQNNDDICKLLQRRTVSNFLCSDFREKMDRLMESHKGTQTNLLASPGDDDEVNHHGEIGQLIGFLQKKMNSNPTKEEEEEEDEDDEEEEEKEEEEEEEEEKEEEEEEEILISGSYNEESDSMNHSSPSPSQWRYGDDSASLTQPSQSPSFFHNTQRKYSSPTNPPPSIEMELIYDLRGHMKQLYQEMFELRKSIRSCIDMQMNLQKSLNRENHTAKGKKSHDRVLKKGNCCICSNMKADSLFYRCGHMCTCLKCANELQSKKGMCPICEAPIVDVVRVYVDA 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0558 818 PANTHER BNAC05G24000D PROTEIN 1 817 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 601 702 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 64 117 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 134 173 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 650 702 - -
Lele34g0558 818 ProSiteProfiles Zinc finger RING-type profile. 766 805 IPR001841 -
Lele34g0558 818 SUPERFAMILY RING/U-box 765 810 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 612 649 - -
Lele34g0558 818 Pfam Zinc finger, C3HC4 type (RING finger) 763 810 - -
Lele34g0558 818 CDD mRING-HC-C3HC5_NEU1 765 804 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 351 503 - -
Lele34g0558 818 Coils Coil 453 473 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 134 181 - -
Lele34g0558 818 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 741 817 IPR013083 -
Lele34g0558 818 MobiDBLite consensus disorder prediction 64 94 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 421 447 - -
Lele34g0558 818 Coils Coil 610 647 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 465 499 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 374 396 - -
Lele34g0558 818 MobiDBLite consensus disorder prediction 448 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0558 Lele-ChrLele34 14624607 14630659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0558 700 815 C3H Transcription Factor Family AT4G13100 26.724 2.46e-06 48.1