Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0504 ATGGTTGCTCCTAGTTCTACGCACCTCCCGGACCACTTCAAGTGTCCGATTTCGCTCGAGATAATGTCCGACCCGGTTATCCTCTCCTCCGGTCACACCTTCGATCGGTCTTCAATCCAACGGTGGCTCGACGCCGGCCACGGGACTTGTCCAATCACGAACCTACCCCTTCCGGATTGTCCTTCCCTAGTACCCAATCACGCTCTCAGAAGCTTGATTTCAAACTATTACCATATCTCACCATTCAAGCAGCGGCCTCCTTCCCAACCGGAAACCCTAATTTCCGCTATTACCTCTCGCTCGTCGTCATTGGAGAGCAAAATTGAATCGCTCGACCAACTTACGCGCCTTTCCAAGCGTGACTCGGTTTTCCGTCGGCGGTTGACTGAGTCAGGAGTGATGTCGGCGGTGCTGAACTGCGTTGTCTCTGGTGAGCCTAGGTTACAGGAGAAAGCGCTTTCGTTGTTGCTCAATCTTAGTCTCGACGACGATAACAAGGTGGGTTTGGTGGCGGAGGGTGCGATAGGGAAGGTTGTGGCTGTTCTGTTAGGTGGCTCACCGGATTGCCGAGCGGTGGCGGCAACCATGTTGACGAGTTTGGCGGTTGTGGAGGTGAACAAAGCCACAATTGGTGCTTATCCATATGCTATAGGAGCTCTTGCTTCTCTTCTTCGAGATGGTGAAGGCAGGGAGAAGAAAGAAGCAGCCACAGCGCTCTATGCTATATGTTCTTTTCCGGATAATGGGAGGAGAGCCGTAGAATGTGGGGCGGTACCAATTTTGCTAAGAAGTGTTGATTCTGGGCTTGAAAGGGCCGTTGAAGTTCTTGGTGTGCTTGCTAAGTGTAGGGAAGGTAGAGAACAAATGGAAAGGTATAATGGGTGCATACAGATTTTAGTACGGGTGTTGAGGAATGGAAGCTTGAGGGGAATTCAATATGCCTTGTTAGCACTGAATTCCGTTTGCTGTTATAGTGAAAAAATGGTTCTTGATGCGACTAAACAAGGAGTTTTGGATATTTGTCTGGGATTGCTGGAAGATGATAATGAAAAACTAAGGAGAAATTCATCCAGTTTGATTAAGGTTTTACGTGGCAACCACCGGATTAGTTGA 1113 0.4906 MVAPSSTHLPDHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHGTCPITNLPLPDCPSLVPNHALRSLISNYYHISPFKQRPPSQPETLISAITSRSSSLESKIESLDQLTRLSKRDSVFRRRLTESGVMSAVLNCVVSGEPRLQEKALSLLLNLSLDDDNKVGLVAEGAIGKVVAVLLGGSPDCRAVAATMLTSLAVVEVNKATIGAYPYAIGALASLLRDGEGREKKEAATALYAICSFPDNGRRAVECGAVPILLRSVDSGLERAVEVLGVLAKCREGREQMERYNGCIQILVRVLRNGSLRGIQYALLALNSVCCYSEKMVLDATKQGVLDICLGLLEDDNEKLRRNSSSLIKVLRGNHRIS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0504 370 SUPERFAMILY RING/U-box 7 77 - -
Lele34g0504 370 CDD RING-Ubox_PUB 13 54 IPR045210 -
Lele34g0504 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 85 IPR013083 -
Lele34g0504 370 Pfam U-box domain 10 77 IPR003613 GO:0004842|GO:0016567
Lele34g0504 370 ProSiteProfiles U-box domain profile. 8 83 IPR003613 GO:0004842|GO:0016567
Lele34g0504 370 FunFam RING-type E3 ubiquitin transferase 8 80 - -
Lele34g0504 370 SMART arm_5 121 161 IPR000225 GO:0005515
Lele34g0504 370 SMART arm_5 162 202 IPR000225 GO:0005515
Lele34g0504 370 SMART arm_5 282 323 IPR000225 GO:0005515
Lele34g0504 370 SMART Ubox_2 12 76 IPR003613 GO:0004842|GO:0016567
Lele34g0504 370 Gene3D - 89 270 IPR011989 -
Lele34g0504 370 Gene3D - 271 363 IPR011989 -
Lele34g0504 370 SUPERFAMILY ARM repeat 92 363 IPR016024 -
Lele34g0504 370 PANTHER U BOX DOMAIN-CONTAINING 9 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0504 Lele-ChrLele34 5822190 5823302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0504 9 365 U-box Gene Family AT4G21350 61.370 9.23e-154 436