Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0424 ATGTTCTCAAGTGCCTTGCTTTATGAAATGATTGAGTTTTGCTTCTGTGAAGTACTTGATGCGTTGATCTCAATACTTAACATATCAACGAGTTGCGAAGCCCCAAAGACAGAAATGGGGAGAGCGAAGATTGTGATTAAGAGGATTGACGATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTCAAGAAAGCAAGAGAACTTTCGATCCTCTGCGACGCCCAAGTTGGCGTTATTGTGTTCTCCAGCACTGGCAAGCTCTATGAATATGGAAGCTCCAGGTGCCAAGTCTTCTTCTTCCAGATCTCTTTGTGCCAATTCATCTTCTTCCAGATCTCTCTGAGTCGTTGTTGGGTGCTGAGTCGTCGTCCCACATCGTTGCTATCTTCTTCTTCTTCTTCATATGTTGAGCATAGATTGGATTGAGCTGGACAAGAATTGAAAATAGTTGATGATGTAATACGTTGCATGAAATCTATTATTGAGCGCTACAACAAACTAAAGGTGGAACACCAGCATATGAATCCTGATTCGGAAGTCAAGTTTTGGCAGAGAGAAGTGATACTATTGAGGCAACAACTTCAACATATGCAAGAATGCCAAAGGCAATTGATGGGTGCACAACTTTCTGTTTTGAGCATTGAGGAACTGCAAAATCTGGAAAATCAACTGGAGATGAGTTTAAAGGGTGTCCGAATAAAAAAGAATCAAATTTTAACGGATGAGATTGAACAGCTGCAACGAAAGGGAAATCAAATCCATCAAGAAAATGTACAACTCTATAAAAGGATAAACCTCATTACTAAAGAAAATGTAGAACTACAGAAGATTCATGAGGCAAGGATTATGAATGAAGAAGATGGGAATTCCGATCCTATACACAATATCAGCAACAAATATGGTTTACAAGCTCCAAACCATCTGCAGCCGAACCATCCACGACCTCAATATGCTGAATCAGCAGCAAAAGCTATGGAACTGAGTAAAAAGCATGAATTTGATCCCAAAAATTTTACTTTCATTGAAGTAACCATCAAATGGGAAACTGATCTCTCATGGTCCTTATCGGTTTCTGTCTTTTCTTAA 1101 0.3951 MFSSALLYEMIEFCFCEVLDALISILNISTSCEAPKTEMGRAKIVIKRIDDSTSRQVTFSKRRNGLLKKARELSILCDAQVGVIVFSSTGKLYEYGSSRCQVFFFQISLCQFIFFQISLSRCWVLSRRPTSLLSSSSSSYVEHRLDXAGQELKIVDDVIRCMKSIIERYNKLKVEHQHMNPDSEVKFWQREVILLRQQLQHMQECQRQLMGAQLSVLSIEELQNLENQLEMSLKGVRIKKNQILTDEIEQLQRKGNQIHQENVQLYKRINLITKENVELQKIHEARIMNEEDGNSDPIHNISNKYGLQAPNHLQPNHPRPQYAESAAKAMELSKKHEFDPKNFTFIEVTIKWETDLSWSLSVSVFS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0424 366 ProSiteProfiles K-box domain profile. 185 275 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele34g0424 366 CDD MADS_MEF2_like 40 101 IPR033896 GO:0000977|GO:0045944
Lele34g0424 366 ProSitePatterns MADS-box domain signature. 41 95 IPR002100 GO:0003677|GO:0046983
Lele34g0424 366 Coils Coil 219 239 - -
Lele34g0424 366 MobiDBLite consensus disorder prediction 291 320 - -
Lele34g0424 366 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 48 95 IPR002100 GO:0003677|GO:0046983
Lele34g0424 366 Pfam K-box region 182 269 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele34g0424 366 SUPERFAMILY SRF-like 39 100 IPR036879 GO:0003677|GO:0046983
Lele34g0424 366 PRINTS MADS domain signature 61 76 IPR002100 GO:0003677|GO:0046983
Lele34g0424 366 PRINTS MADS domain signature 41 61 IPR002100 GO:0003677|GO:0046983
Lele34g0424 366 PRINTS MADS domain signature 76 97 IPR002100 GO:0003677|GO:0046983
Lele34g0424 366 SMART madsneu2 39 98 IPR002100 GO:0003677|GO:0046983
Lele34g0424 366 Coils Coil 241 261 - -
Lele34g0424 366 PANTHER SERUM RESPONSE FACTOR HOMOLOG 41 297 - -
Lele34g0424 366 Gene3D - 52 108 IPR036879 GO:0003677|GO:0046983
Lele34g0424 366 MobiDBLite consensus disorder prediction 295 310 - -
Lele34g0424 366 ProSiteProfiles MADS-box domain profile. 39 99 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0424 Lele-ChrLele34 4239849 4249942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0424 161 333 MADS-box Gene Family AT3G57230 44.571 4.94e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele34g0424 K-box 9.7e-25 No_clan