Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0382 ATGAATGGTAGTTTAGCTGTCATGTTGGTTCTCATGGACAACACAAGTGAAAATACATCAAAAGAAACTCAGCGCAAATATGAAGTTAAGGAAGACCAAACTTTTGAAGAGTTAGGACTGGATGCACGACTAATTCATGCCTTACTCAAAAAGGGAGTCGAGAAACCAACTCCAATTCAACAGGTGGCCATTCCACTAATATTGGAAGGTAAGGATGTGGTTGCTCGAGCAAAGACAGGTTCTGGCAAGACATTTGCATACCTTCTTCCATTGCTCCAAAAATTGTTCACTAATAATGTTCAAAGAAAGAAGCTATCACCCAATGCATTCATTCTTGTGCCAACTCGAGAACTATGTCAACAGGTATATGCAGAGGTTTCATCTCTCATAGAATTATGCAGAGTTCAACTGAAAGCTGTGCAATTGACAAGCAATATGAAGGCTTCTGATCTGCGGACAGCAATGACTGGACCACCTAATGTTTTGATTTCCACACCTGCTTGTATTGCTAAATGCTTGTCCACTGGCATACTTAAATCAACATCCTTTAATGGTTCCCTTGAAACTCTAGTTCTTGATGAGGCAGATCTTCTATTGTCATACGGCTATGAAAATGATATAAAAGCCTTTTCAGCTCATGTGCCCAGAAGTTGCCAGTGTCTTCTTATGTCCGCAACATCAAGTGCTGATGTTGACAAATTAAAGAAGTTGATGCTGCACAACCCCTTTATTTTGACTTTGCCTGAACTAGGAAGTCAGAAGGATGAGATTATCCCTAAAAACGTTCAACAATTTTGGATCTCATGCCCTGCCAATGATAAGTTGCTTTCCGTCCTTGCCTTGTTGAAGTTAGAGTTGGTCCAAAAGAAAGTTCTAATATTTACCAATACCATAGACATGAGTTTCAGATTGAAACTGTTCTTGGAAAAGTTTGGAATCAAGTCTGCTGTATTAAATGCTGAGTTGCCACAGAATTCTCGTCTCCATATTCTTGAGGAATTCAATGCTGGCCTCTTTGATTATCTTATTGCAACTGATGACAGCCACATAAAGGAGAAGGATGAAGCAACTAAAGAAAATAATGGTGAGTTGCGGCAATCCAAAAAACACGTCAAGCAAAAATTAGATTCTGAATTTGGAGTTGTGAGGGGAATCGACTTTAAAAATGTATACACGGTTATAAACTTTGAAATGCCTCAAAGTGTTGCAGGATACGTCCATCGAATAGGACGTACTGGAAGAGCATACAATTATGGTTCTTCTGTATCTTTGGTTTCTACTGATGAGATGGAAACTTTAGATGAAATAAGATCTTTTGTTGGGGATGATGAAAACAATGGTTCAAACACAATTGCTGAATTTCCGTTGCTTACCAAGAATGCTGTGGAATCTTTCCGGTATCGGGCTGAGGATGTTGCAAAGAGTGTAACAAAAATTGCAGTTCGTGAATCACGAGCCAAGGATTTGAGGAATGAAATTCTAAACTCTGAAAAATTGAAGGCACACTTTGAATCTAATCCAAGGGACCTAGATCTATTGAAGCATGACAAAGTTTTGAGCAAAAATGCCCCTCCGGCACACCTACGTGATGTGCCGGACTATTTAGTAGATAAAACAACCAAAGAGGCAAGGGAAATGGTCAAGCTTGCAAGGGATGCAATGGGAAATAATAATCGTTCACGAGGATCAAAAAGGAAAAGGTCCAGGAAAGGTGGAGACCCTCTCAAGGCTATATCTGCCAAGGTGTCAAAAAGACCACACAAAGTGGATGGACATAAACGCAGGAAGAAAAATGAAGTTTGA 1803 0.3966 MNGSLAVMLVLMDNTSENTSKETQRKYEVKEDQTFEELGLDARLIHALLKKGVEKPTPIQQVAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFTNNVQRKKLSPNAFILVPTRELCQQVYAEVSSLIELCRVQLKAVQLTSNMKASDLRTAMTGPPNVLISTPACIAKCLSTGILKSTSFNGSLETLVLDEADLLLSYGYENDIKAFSAHVPRSCQCLLMSATSSADVDKLKKLMLHNPFILTLPELGSQKDEIIPKNVQQFWISCPANDKLLSVLALLKLELVQKKVLIFTNTIDMSFRLKLFLEKFGIKSAVLNAELPQNSRLHILEEFNAGLFDYLIATDDSHIKEKDEATKENNGELRQSKKHVKQKLDSEFGVVRGIDFKNVYTVINFEMPQSVAGYVHRIGRTGRAYNYGSSVSLVSTDEMETLDEIRSFVGDDENNGSNTIAEFPLLTKNAVESFRYRAEDVAKSVTKIAVRESRAKDLRNEILNSEKLKAHFESNPRDLDLLKHDKVLSKNAPPAHLRDVPDYLVDKTTKEAREMVKLARDAMGNNNRSRGSKRKRSRKGGDPLKAISAKVSKRPHKVDGHKRRKKNEV 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0382 600 Pfam DEAD/DEAH box helicase 57 234 IPR011545 GO:0003676|GO:0005524
Lele34g0382 600 MobiDBLite consensus disorder prediction 550 600 - -
Lele34g0382 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 257 441 IPR027417 -
Lele34g0382 600 CDD DEADc_DDX56 40 247 - -
Lele34g0382 600 Gene3D - 250 454 IPR027417 -
Lele34g0382 600 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 64 245 IPR014001 -
Lele34g0382 600 SMART helicmild6 302 416 IPR001650 -
Lele34g0382 600 PANTHER RNA HELICASE 19 538 - -
Lele34g0382 600 Pfam Helicase conserved C-terminal domain 273 416 IPR001650 -
Lele34g0382 600 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 274 462 IPR001650 -
Lele34g0382 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 246 IPR027417 -
Lele34g0382 600 Coils Coil 486 506 - -
Lele34g0382 600 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 33 61 IPR014014 GO:0003724
Lele34g0382 600 CDD SF2_C_DEAD 262 425 - -
Lele34g0382 600 Gene3D - 10 247 IPR027417 -
Lele34g0382 600 SMART ultradead3 52 265 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0382 Lele-ChrLele34 3427416 3433687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0382 34 456 Eukaryotic Initiation Factors Gene Family AT3G19760 25.532 2.20e-37 142