Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele34g0381 ATGACGAGAAGGAAGATAGCTATAAAGAAGATCGAGAACGTAGCAGCGAGGCAAGTGGCTTTCTCAAAGAGAAGAAAAGGTCTATTCAAGAAGGCCATGGAGCTCTCAACTCTCTGTGATGCTGAGATTGCACTCTTAGTTTTCTCAGCTACTGGTAAACTCTTTGATTATGCTAGTACAAGCACGAGGCAGGTAATTGAAAGGAGAAATATGTACTCAGATGTGAACCTTGTCAAGTCATACCAGTCATCTCAAGAACTACAGGTTGAAGGTGAGTATTTTAAGCTAAACAAGGAACTAAAAGAGAAGACTCGTGAACTGAGACAGCTTAATGGAGAAGAACTACAAGGGTTGTCCATAAAAGATCTAAGGAAACTTGAAGATTTACTTAACACAAGCTTGAATCGCATTTCAAAAGCAAAGGATGAAGTATATGAGCAGGAGATCAATATTCTAAAGAAAGAGGAAATCAAATCCATGGAGGAAAACCAGAGATTAAATCAGGCCCAATGGCTTGAGCTATGGCTTGAGCATGAACAAGACCAGCCATTGGATACGTCTCTCACAACCAAATTACTCTTTCCGTGA 588 0.4014 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSATGKLFDYASTSTRQVIERRNMYSDVNLVKSYQSSQELQVEGEYFKLNKELKEKTRELRQLNGEELQGLSIKDLRKLEDLLNTSLNRISKAKDEVYEQEINILKKEEIKSMEENQRLNQAQWLELWLEHEQDQPLDTSLTTKLLFP 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele34g0381 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele34g0381 195 Coils Coil 123 143 - -
Lele34g0381 195 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 164 - -
Lele34g0381 195 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Lele34g0381 195 Gene3D - 13 87 IPR036879 GO:0003677|GO:0046983
Lele34g0381 195 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele34g0381 195 Pfam K-box region 82 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele34g0381 195 Coils Coil 93 113 - -
Lele34g0381 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele34g0381 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele34g0381 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele34g0381 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele34g0381 195 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Lele34g0381 195 ProSiteProfiles K-box domain profile. 86 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele34g0381 Lele-ChrLele34 3364901 3373582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele34g0381 1 179 MADS-box Gene Family AT2G22540 49.724 5.52e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele34g0381 K-box 2.5e-14 No_clan